PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00714g03005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 263aa MW: 28984.8 Da PI: 5.9253 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Peinf101Scf00714g03005.1 84 YTCTFCRREFRSAQALGGHMNVH 106 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.94E-6 | 81 | 111 | No hit | No description |
PROSITE profile | PS50157 | 11.157 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAAELGILSL TQLQKLAQSQ EQQNQQQSPP QPQLNSSSTT GYWMWNTKQS IPTTAQDDDD 60 SWEVRAFEED TGNAMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQAPSLA 120 SNSNHTLPNA NSTLLIPTQE FAANGGLCLL YSLPNPNGHV FNPTLTKSCI NNNSPSTLLS 180 ISPLPTNNLM SPYPHPPNLN FPINRPPSIN TSFNISEPSA SNTSNDNNNP DYGSSKRDSS 240 AIEEEIDLEL RLGWRSSSTT SSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 79 | 106 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 79 | 106 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 5e-63 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554111.1 | 1e-122 | PREDICTED: zinc finger protein JAGGED | ||||
TrEMBL | A0A1U8F631 | 1e-120 | A0A1U8F631_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3AFF7 | 1e-120 | A0A2G3AFF7_CAPAN; zinc finger protein JAGGED | ||||
STRING | XP_009589081.1 | 1e-110 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5953 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 6e-40 | C2H2 family protein |