PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00669g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 17845.7 Da PI: 7.8601 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107 | 1.5e-33 | 11 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 aC++Ck++r++C ++C lapyfp +++++f+nv +lFG++n +k+l+++p++++ ++++sl+ eA++r ++Pv+G++++ +kl+ Peinf101Scf00669g02001.1 11 ACSVCKHQRKRCDENCQLAPYFPTSRAEDFQNVYRLFGVNNTIKVLRSVPDDQKGITVESLILEARIRKENPVHGCLAIERKLRA 95 7************************************************************************************ PP DUF260 86 qleqlkaelallkeel 101 ++e +++el+ +++++ Peinf101Scf00669g02001.1 96 EIEAHEKELEIIRKQI 111 **********999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.339 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-31 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MNTDVLMFVG ACSVCKHQRK RCDENCQLAP YFPTSRAEDF QNVYRLFGVN NTIKVLRSVP 60 DDQKGITVES LILEARIRKE NPVHGCLAIE RKLRAEIEAH EKELEIIRKQ IASCKKMTML 120 QMERQQLEEQ LNRSSLALVS PTDAHHHDMV HPPPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-18 | 12 | 111 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-18 | 12 | 111 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801618.1 | 1e-83 | PREDICTED: LOB domain-containing protein 22-like | ||||
Refseq | XP_016471190.1 | 1e-83 | PREDICTED: LOB domain-containing protein 22-like | ||||
TrEMBL | A0A1S4A3K4 | 3e-82 | A0A1S4A3K4_TOBAC; LOB domain-containing protein 22-like | ||||
TrEMBL | A0A1U7YEQ3 | 3e-82 | A0A1U7YEQ3_NICSY; LOB domain-containing protein 22-like | ||||
STRING | XP_009801618.1 | 6e-83 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-28 | LOB domain-containing protein 27 |