PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00650g29061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26884.4 Da PI: 6.2956 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.2 | 1.6e-21 | 23 | 71 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i nk r vtfskR +g++KKA+ELS+LC+ae+a+i+ s gk++ + Peinf101Scf00650g29061.1 23 KKITNKESRAVTFSKRHKGLFKKASELSILCGAEIAIILQSLAGKVFAF 71 689******************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-29 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.796 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.92E-33 | 16 | 91 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-25 | 16 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-22 | 24 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNKENNPTNM VKKTQGRRKI EIKKITNKES RAVTFSKRHK GLFKKASELS ILCGAEIAII 60 LQSLAGKVFA FGHPSPNVVI ERYLTDIGRS EAGTSVTGGE TTMQTNLTVQ QYNQYYSQLC 120 REVEAEKKKK DIMMEEMKNM GNDNYYTNNG GYWWDKQTDD MGLEELEEFM VALEELKKNV 180 SVRADELAMI NNSSLPSSSN STLTTTNRFG VDHDKELLNQ TLDFCSSTSI VPYDAWF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231377.1 | 2e-73 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7ERW3 | 5e-72 | A0A3Q7ERW3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g106700.2.1 | 9e-73 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65360.1 | 2e-25 | AGAMOUS-like 23 |