PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00650g24031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 22054.5 Da PI: 4.7779 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.3 | 1.8e-37 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ ++ ae ++wyf+s++ + +r+t +gyW+ Peinf101Scf00650g24031.1 8 LPPGFRFYPTDEELVVHFLQRKASLLPCHP-DVIPDLDLYPYDPWDLDGNAMAEGNKWYFYSRKTR--------SRITGNGYWQP 83 79*************************999.99**************976667899******9866........6899******* PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g d+++ls+ ++++vg+kk +fy+g+ +g+kt+W+m+eyrl Peinf101Scf00650g24031.1 84 LGVDEPILSTsSNHKVGMKKCYTFYTGEPTEGVKTNWIMQEYRL 127 ********9877888***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-48 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.937 | 8 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-22 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MGDNNVNLPP GFRFYPTDEE LVVHFLQRKA SLLPCHPDVI PDLDLYPYDP WDLDGNAMAE 60 GNKWYFYSRK TRSRITGNGY WQPLGVDEPI LSTSSNHKVG MKKCYTFYTG EPTEGVKTNW 120 IMQEYRLSDS SASGSRSSSR RRSHSKIDYN KWVVCRVYEC NGDNDDANSA ELSCLDEVFL 180 SLDDLDEITL QR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-39 | 4 | 159 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-39 | 4 | 159 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-39 | 4 | 159 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-39 | 4 | 159 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-39 | 4 | 159 | 16 | 167 | NAC domain-containing protein 19 |
3swm_B | 3e-39 | 4 | 159 | 16 | 167 | NAC domain-containing protein 19 |
3swm_C | 3e-39 | 4 | 159 | 16 | 167 | NAC domain-containing protein 19 |
3swm_D | 3e-39 | 4 | 159 | 16 | 167 | NAC domain-containing protein 19 |
3swp_A | 3e-39 | 4 | 159 | 16 | 167 | NAC domain-containing protein 19 |
3swp_B | 3e-39 | 4 | 159 | 16 | 167 | NAC domain-containing protein 19 |
3swp_C | 3e-39 | 4 | 159 | 16 | 167 | NAC domain-containing protein 19 |
3swp_D | 3e-39 | 4 | 159 | 16 | 167 | NAC domain-containing protein 19 |
4dul_A | 3e-39 | 4 | 159 | 13 | 164 | NAC domain-containing protein 19 |
4dul_B | 3e-39 | 4 | 159 | 13 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106335.1 | 1e-106 | NAC domain-containing protein 104-like | ||||
Refseq | XP_027159802.1 | 1e-106 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 3e-80 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A068TMB6 | 1e-105 | A0A068TMB6_COFCA; Uncharacterized protein | ||||
STRING | XP_009622295.1 | 2e-99 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-67 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|