PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00606g08019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 310aa MW: 35638.2 Da PI: 4.3099 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e++ +LAk+lgL+ rq+ +WFqNrRa++k Peinf101Scf00606g08019.1 92 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAKELGLQPRQIAIWFQNRRARYK 145 45578899*********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.98E-18 | 79 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 90 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-15 | 92 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.94E-17 | 92 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-19 | 95 | 154 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.9E-6 | 118 | 127 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-6 | 127 | 143 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.4E-11 | 147 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEVRIVNESS NMTSTTNTVM LSNEKFPPSS EVLHSLWMSN SSPSFHGPAS MVNFEDGQGE 60 MTKERPFFTQ IEKEETSNND DYDSSCFHQP EKKRRLLPNQ VQFLEKSFEV DNKLEPERKV 120 QLAKELGLQP RQIAIWFQNR RARYKTKNLE KDYDVLKTSF DKLKADYDTL FKENEDLRNE 180 EKGKENSEQS EPISPIDEKE AEKAIPNVVT SDVQSMSKVV CKLEDASSAK SDVIDSDSPH 240 YTDGNHSSIY LEPADSSNIF EPEPSDFSQD EDDNLSKSFL CFPDIGDQIQ ASSCNLSFQI 300 EDQPCWFWQY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-107 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230957.1 | 1e-174 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A314KIA2 | 1e-173 | A0A314KIA2_NICAT; Homeobox-leucine zipper protein hat5 | ||||
STRING | XP_009610614.1 | 1e-167 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-45 | homeobox 1 |