PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00594g17028.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 263aa    MW: 30398.1 Da    PI: 7.7429
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00594g17028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.99.3e-20124209290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                                Yn+YA   GF vrk +++++ rn+e t+  f Cs+egk+ e+++  +++ r+r   r+gC a++k k + +g+wev ++  eHn
  Peinf101Scf00594g17028.1 124 AYNSYAVAKGFGVRKGAKTYN-RNNELTRCLFLCSCEGKSPENSNY-QERLRQRLGYRCGCMARIKFKIS-NGVWEVFEICDEHN 205
                               5****************9999.5556****************9999.99999****************99.************** PP

                      FAR1  87 Hela 90 
                               H++ 
  Peinf101Scf00594g17028.1 206 HPMI 209
                               *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.128.201.7E-17287IPR012674Calycin
SuperFamilySSF508141.98E-122140IPR011038Calycin-like
PROSITE patternPS002130619IPR022272Lipocalin family conserved site
PfamPF082125.2E-9743IPR000566Lipocalin/cytosolic fatty-acid binding domain
PfamPF031011.2E-16124209IPR004330FAR1 DNA binding domain
Gene3DG3DSA:2.40.128.201.7E-17179258IPR012674Calycin
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEVVRNLDLK RYMGRWYEIA SFPSSFVPRN GENTRATYTL HVEGPRNFLG YTLKESVTVF  60
VLNETWSNGK RCYIEGTVNK ADPKNLNFND QDCPAVVHTV SNINNDFAFK NGMKFNTEDE  120
SYEAYNSYAV AKGFGVRKGA KTYNRNNELT RCLFLCSCEG KSPENSNYQE RLRQRLGYRC  180
GCMARIKFKI SNGVWEVFEI CDEHNHPMIE ENLRHFIPSG RKLTEQTHLD EEIYNMLVQK  240
ARDAGYDVSK LHKTPQSDPP PES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266793.18e-75PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3ZUA77e-72A0A1S3ZUA7_TOBAC; Uncharacterized protein
STRINGXP_009771804.13e-72(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1726931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.16e-14FAR1-related sequence 10