PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00590g35001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 19372.2 Da PI: 9.1298 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.4 | 2.1e-14 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+n+ r+++f+kRr ++ K A+EL + C++++ +i+fs+++k + + Peinf101Scf00590g35001.1 16 KIQNEVDRYTSFCKRRSTLYKDASELAIQCNVDIGIILFSPKDKPFSF 63 599**************************************9986665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.965 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-17 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.19E-20 | 8 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-11 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-18 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-11 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-11 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MEDKKTKGRQ KIPMVKIQNE VDRYTSFCKR RSTLYKDASE LAIQCNVDIG IILFSPKDKP 60 FSFIHPTVES VIDRFLGPHA QLSESTRLVA AYARNKVNEL NRKTKELDKI EEATNKQAHA 120 YEKMEKVCHK GWWESIEHLN EDEIMKLEAW LKATTFNMDR RLNEK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016474013.1 | 4e-68 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1S4ABV1 | 9e-67 | A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61 | ||||
STRING | XP_009595132.1 | 2e-65 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009595152.1 | 2e-65 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 8e-30 | AGAMOUS-like 61 |