PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00578g03013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 29053.7 Da PI: 7.7684 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.5e-19 | 115 | 169 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k Peinf101Scf00578g03013.1 115 RKKLRLTKAQSALLEESFKEHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 169 788899***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.21E-18 | 102 | 172 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.653 | 111 | 171 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 113 | 175 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.0E-16 | 115 | 169 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-18 | 115 | 169 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.50E-16 | 115 | 172 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 146 | 169 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 9.2E-11 | 171 | 205 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.3E-24 | 171 | 214 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGFDDICTTG LVLGLGFSDQ KSTKITQPLS KGLSLGFEPS LTLSLTNDHT QAAAKKVNDH 60 QLSADDLYRQ DSAASSYSNV SVKRERDLGS EETTTEVERV SSRVSDEDDD GSNARKKLRL 120 TKAQSALLEE SFKEHSTLNP KQKQDLAREL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL 180 KKCCETLTEE NRRLHKELQE LKALKIAQPL YMQLPAATLT MCPSCERIGG VGENPSKNPF 240 TITQKPHFYS PFTNPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 171 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU998972 | 1e-166 | EU998972.1 Capsicum annuum homeodomain leucine-zipper 1 (HB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019267376.1 | 1e-152 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 1e-95 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A314KZ31 | 1e-151 | A0A314KZ31_NICAT; Homeobox-leucine zipper protein hat22 | ||||
STRING | XP_009775231.1 | 1e-150 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 8e-91 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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