PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00576g03008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 1250aa    MW: 136029 Da    PI: 5.0491
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00576g03008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP64.44.2e-20168213247
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdskt 47 
                                g+kdrhsk+ T +g+RdRRvRls++ a++f+dLqd+LG+d++sk+
  Peinf101Scf00576g03008.1 168 SGGKDRHSKVLTLKGLRDRRVRLSINAAIQFYDLQDKLGYDQPSKA 213
                               689*****************************************97 PP
2GRAS245.32.5e-753796701304
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               lve+L++cAeav++++l+la+ l+  ++ la ++  + +++a yf++AL +r+++             t++++ +e   ++  f+
  Peinf101Scf00576g03008.1 379 LVETLMACAEAVQQKNLNLADGLVRDIRILAVQQSGAKKKVANYFAQALDRRIHE-------------TNPHDIVEFSYYTDQFY 450
                               6899**************************************************9.............444568888888899** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               e+s +lk++h+t+NqaI++a+++ +rvH+iDf++++GlQW aL++ La R++gpp +R+T +g+ +++++ +l+e++++La++A+
  Peinf101Scf00576g03008.1 451 ETSRYLKVGHFTTNQAIVNAFANYNRVHVIDFSLNKGLQWRALMHDLALRSGGPPAFRLTRIGPVQPDNTAALQEVEWKLAELAD 535
                               ************************************************************************************* PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv.eqeadhnses 252
                               ++gv+fe++ + +++l++++   L+++p   Ea+aVn++l+l++l+    s++ +++++L+ + +++Pk+v+   eq  +hn++ 
  Peinf101Scf00576g03008.1 536 SIGVEFEYREIEVSSLAEVDATILDIRPsnLEAVAVNFALELYHLM---FSSPGAIEKLLHSIEEMQPKIVTSFrEQAENHNGSV 617
                               ***************************9989***********9998...444445558**************762666778**** PP

                      GRAS 253 Flerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegae 304
                               F++rf +a + ys++fd l e+++++ ++ ++++ +e+lgr+i n+v    + 
  Peinf101Scf00576g03008.1 618 FVDRFNDAWHNYSTMFDFLeEKEIAQPNSPNSNLVEEYLGRQIYNIVEDTPTI 670
                               *******************8888888775555555555*********988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-20169213IPR005333Transcription factor, TCP
PROSITE profilePS5136917.617170228IPR017887Transcription factor TCP subgroup
PROSITE profilePS5098538.675353722IPR005202Transcription factor GRAS
PfamPF035148.8E-73379670IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1250 aa     Download sequence    Send to blast
MSSLDTTRED EEYFFDSDTA AIIFGISDHS GWGGDSMISD PNIVSSPSMS IDDYQQQISM  60
AVGRGGDDDL MIASSAGASS SRLNNNNKQS EIRIFNVDFR ALSGVAVLSS PSCQSPQNNF  120
PQFCIQGDEQ NQDEKDCVRE IQNSTSVYDV AKLCGWPSSR IVRVSRASGG KDRHSKVLTL  180
KGLRDRRVRL SINAAIQFYD LQDKLGYDQP SKAEEEEGKK KSFREMSSTS MEEGDSILSN  240
TDAIIYGTSD HSGWGGDSMI SDPNIVLSST STDDHYQQQI TTAAGCGGDD SMIVSSSGAS  300
SSWFMNNNNK QSGYKQEVRI FNVDFRATSG VAVRNNSSNK EEGKKGSESS NRLKSCAGSE  360
LSLGLKIGGT VNYETSDRLV ETLMACAEAV QQKNLNLADG LVRDIRILAV QQSGAKKKVA  420
NYFAQALDRR IHETNPHDIV EFSYYTDQFY ETSRYLKVGH FTTNQAIVNA FANYNRVHVI  480
DFSLNKGLQW RALMHDLALR SGGPPAFRLT RIGPVQPDNT AALQEVEWKL AELADSIGVE  540
FEYREIEVSS LAEVDATILD IRPSNLEAVA VNFALELYHL MFSSPGAIEK LLHSIEEMQP  600
KIVTSFREQA ENHNGSVFVD RFNDAWHNYS TMFDFLEEKE IAQPNSPNSN LVEEYLGRQI  660
YNIVEDTPTI YQKKEEEESF HEMSLDTTTE DADTFVSNTD AIIHGTSDHS GWAGDSMISD  720
HNIVLSSTST DEHYQQHISS AAGSGGDDDD MMSGSSSSIA SSSWFKDNNN NNKQSEIRIF  780
NVDFRALSDQ VAVPSSTPST QLLQKNFPQE NTPFSRSRTA LVPIDKKFFT IPSPHLSATA  840
SLQQAATVNA VGHVNSTMAY LERTAQLTIP SSHLSATALL QQAATKGAVS HVKTTMACLD  900
GTAQLTIPSR HLSATALLQQ AATIAAVSHV NSTMAYLDRT AQLTIPSSHL SATALLQQAA  960
TKGAVSHVNS TMACLDGTAH LTNPSRNLSA TALLQQAATI GAVSHVNSTM ACLDGTVQLR  1020
HKTIPKIVGS GNWWGGESMI SDPNIVSSSM SGDDHHQQIL VAAAGGDDND LMIVSSSGPH  1080
SKHFSTLRLV GNMRMEPSKP INKSREEEQD AIIFGTSDHS GWAGNSMISN PNIVLSSTSI  1140
DEQYHQQIST AIGDGGDDST IVSSGASSSW FANNNKQSGH QQEIRIFNVY FRALSWVGVC  1200
NNSNKEEEDK GLESNKQRLK SCGGFKLCLG LNIVGTVNTK ASARLAEALA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3238666426304Protein SCARECROW
5b3h_A1e-3238666425303Protein SCARECROW
5b3h_D1e-3238666425303Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963413e-49GQ496341.1 Solanum lycopersicum TCP transcription factor 24 (TCP24) mRNA, complete cds.
GenBankHG9754473e-49HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755203e-49HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSolyc10g086380.1.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.15e-93GRAS family protein