PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00564g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NAC | ||||||||
Protein Properties | Length: 533aa MW: 59773.8 Da PI: 4.6215 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.8 | 1.2e-54 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 l+pGfrFhPtdeelv +yL++k++g+++++e i+e+diykvePwdLp +++++++ ewyfFs dkky +g r+nrat++gyW Peinf101Scf00564g00012.1 10 LAPGFRFHPTDEELVRYYLRRKISGRPFKVEPPISEIDIYKVEPWDLPgmSRLRTRDLEWYFFSFLDKKYGNGARTNRATEKGYW 94 579***************************888***************5337777888*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+tgkd++v+++k+++vg+kktLv+++grapkg++t+Wvmheyrl Peinf101Scf00564g00012.1 95 KTTGKDRAVFRSKSQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 139 *******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-61 | 8 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.576 | 10 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-28 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MELRGSSNLL APGFRFHPTD EELVRYYLRR KISGRPFKVE PPISEIDIYK VEPWDLPGMS 60 RLRTRDLEWY FFSFLDKKYG NGARTNRATE KGYWKTTGKD RAVFRSKSQV VGMKKTLVYH 120 SGRAPKGQRT NWVMHEYRLI DEELGRAGIP QDAFVVCRVF QKSGAGPKNG EQYGAPFIEE 180 EWEDDELQVL PKGEAAEEFE FSDDICLDGN DLDQILRTVT AVDGAPLPLD SYYGENGSSE 240 ESNNSSNAQN WLHQPDEQKS TDLAVHQNVD VIPGMHLAVH QNVDVIPGMH EYIGESSKNV 300 NSEDVDYLLI EPIINATDDL QSINEAFLEA NDLSNPIETD TSSIDMLDEY LAFFDANDNF 360 ENMGFDSSFL QVIPPNQGLG EYGNNFVSSS KLEPTKFGSD HQLPFMKQAS QMLGNIHAPP 420 AFAAEFPTKD ATLRLNSLSH SSRSVHVTAG LIIRDMTEGG NGTGWPSGKR GDYNIILSFG 480 LSRGIDDSFV ESFYSIHPGK PTSIISRGWF YYLFLCILML SMSLRIGSII CAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-44 | 10 | 168 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-44 | 10 | 168 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-44 | 10 | 168 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-44 | 10 | 168 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-44 | 10 | 168 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-44 | 10 | 168 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-44 | 10 | 168 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-44 | 10 | 168 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-44 | 10 | 168 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-44 | 10 | 168 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-44 | 10 | 168 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-44 | 10 | 168 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-44 | 10 | 168 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-44 | 10 | 168 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF509876 | 0.0 | AF509876.1 Petunia x hybrida nam-like protein 13 (NH13) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599412.1 | 0.0 | PREDICTED: NAC domain-containing protein 53-like isoform X1 | ||||
TrEMBL | A0A1J6KMA5 | 0.0 | A0A1J6KMA5_NICAT; Nac domain-containing protein 78 | ||||
STRING | XP_009599412.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3141 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-120 | NAC domain containing protein 2 |