PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00536g18015.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 835aa MW: 92868.4 Da PI: 5.0253

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00536g18015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.9e-20	98	153	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k Peinf101Scf00536g18015.1 98 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 153 688899***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-20	80	153	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.52E-19	84	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.892	95	155	IPR001356	Homeobox domain
SMART	SM00389	5.8E-19	96	159	IPR001356	Homeobox domain
CDD	cd00086	7.29E-18	98	156	No hit	No description
Pfam	PF00046	1.1E-17	98	153	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	130	153	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.378	289	528	IPR002913	START domain
SuperFamily	SSF55961	1.51E-33	291	527	No hit	No description
CDD	cd08875	4.25E-115	293	524	No hit	No description
SMART	SM00234	8.4E-33	298	525	IPR002913	START domain
Pfam	PF01852	7.2E-43	298	525	IPR002913	START domain
SuperFamily	SSF55961	7.83E-19	551	786	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MFGDCQLFSS MGMGGNTVSS DSLYSSSLQN PNFNFMTMGG NNLPFNIFPP IIPKEENGLL 60 IKSKEEMDSG SGSEHIEGMS GNELETTEQQ QQQQQGKKKR YHRHTARQIQ EMEALFKECP 120 HPDDKQRLKL SQDLGLKPRQ VKFWFQNRRT QMKAQQDRAD NAVLRAENDN LKNENYRLQA 180 ALRSIMCPSC GGPAMLGEMG YDEQQLRLEN ARLKEEFERV CCLVSQFNGR PMQGLGPTAP 240 LLPPSLELDM SIFPRKFEEP MANCHDNMIP VPFMPENPQF SGTAGPMILE DEKSLAMELA 300 LSSMDELVKM CQAADPLWIR STNDSGKEVL NLEEYSRMFP WPVGIKQNSN ELRIEATRSS 360 AVVIMNSITL VDALLDANKW IELFPSIISR AKTIQVVNSG VSGHASGSLQ LMFMEMQVLT 420 PLVPTRECYF LRYCQQNVEE GTWAIVDFPL DSLHNNFPPP FPYFKRRPSG CIIQDMPNGY 480 SRVTWVEHAE IEENPVNQIF NHYVTCGMAF GAQRWLSTLQ RQCERLASLM ARNISDLGVI 540 PSPEARKSLM NLAQRMIKTF CMNITTSCGQ SWTALSDSLE DTVRITTRKV TEPGQPNGLI 600 LSAVSTTWLP YNHFQVFDLL RDERRRAQLD VLSNGNSLHE VAHIANGSHP GNCISLLRIN 660 VASNSSQSVE LMLQESCTDD SGSLVVYTTV DVDAIQLAMN GEDPSCIPLL PLGFVITPVG 720 QTNCDSNITN EANSAEKKSF PIQESGGCLL TVGLQVLAST IPTAKLNLSS VTAINHHLCN 780 TVQQINAALT TTYGNTTCHD NSGIVPSYAE SAVTLPPPSQ QQLESKQADE INSNS

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MFGDCQLFSS MGMGGNTVSS DSLYSSSLQN PNFNFMTMGG NNLPFNIFPP IIPKEENGLL  60
IKSKEEMDSG SGSEHIEGMS GNELETTEQQ QQQQQGKKKR YHRHTARQIQ EMEALFKECP  120
HPDDKQRLKL SQDLGLKPRQ VKFWFQNRRT QMKAQQDRAD NAVLRAENDN LKNENYRLQA  180
ALRSIMCPSC GGPAMLGEMG YDEQQLRLEN ARLKEEFERV CCLVSQFNGR PMQGLGPTAP  240
LLPPSLELDM SIFPRKFEEP MANCHDNMIP VPFMPENPQF SGTAGPMILE DEKSLAMELA  300
LSSMDELVKM CQAADPLWIR STNDSGKEVL NLEEYSRMFP WPVGIKQNSN ELRIEATRSS  360
AVVIMNSITL VDALLDANKW IELFPSIISR AKTIQVVNSG VSGHASGSLQ LMFMEMQVLT  420
PLVPTRECYF LRYCQQNVEE GTWAIVDFPL DSLHNNFPPP FPYFKRRPSG CIIQDMPNGY  480
SRVTWVEHAE IEENPVNQIF NHYVTCGMAF GAQRWLSTLQ RQCERLASLM ARNISDLGVI  540
PSPEARKSLM NLAQRMIKTF CMNITTSCGQ SWTALSDSLE DTVRITTRKV TEPGQPNGLI  600
LSAVSTTWLP YNHFQVFDLL RDERRRAQLD VLSNGNSLHE VAHIANGSHP GNCISLLRIN  660
VASNSSQSVE LMLQESCTDD SGSLVVYTTV DVDAIQLAMN GEDPSCIPLL PLGFVITPVG  720
QTNCDSNITN EANSAEKKSF PIQESGGCLL TVGLQVLAST IPTAKLNLSS VTAINHHLCN  780
TVQQINAALT TTYGNTTCHD NSGIVPSYAE SAVTLPPPSQ QQLESKQADE INSNS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009593	1e-106	AP009593.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0018O15, complete sequence.
GenBank	HG975520	1e-106	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786380.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_009786381.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_009786382.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A1U7XIT3	0.0	A0A1U7XIT3_NICSY; homeobox-leucine zipper protein HDG5 isoform X1
STRING	XP_009786380.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9020	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]