PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00536g12003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family BBR-BPC
Protein Properties Length: 229aa    MW: 25210.8 Da    PI: 10.3865
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00536g12003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind215.26.1e-6663229133301
                 GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtG 217
                                + + +  ++++ +k+k++k+ r+   +  k +++++k+ +sk+++ + +   ++  +k+   +     s D s++P+P CsCtG
  Peinf101Scf00536g12003.1  63 VNVKFKA-KPQKVNKHKSSKGLRGIASRLLKVEQPENKPCTSKRTKGEYK-YGEATVTKNPNSVYSGAASADFSGVPPPFCSCTG 145
                               2222222.233333333333445555555555555554444433333333.2456667777777778899*************** PP

                 GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                               + r+CY+WG GGWqS+CCt+t+S yPLP+++ ++g R++grKmS+ga++klL +La+eG dlsnpvDLk+hWAkHG nkf+ti+
  Peinf101Scf00536g12003.1 146 VARRCYRWGLGGWQSSCCTITLSEYPLPMNPSKPGNRLGGRKMSNGAYTKLLCRLATEGRDLSNPVDLKNHWAKHGSNKFITIK 229
                               ***********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.1E-491229IPR010409GAGA-binding transcriptional activator
PfamPF062171.4E-6061229IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGPFPGSYPR ASQVNHKEET FDSHFPWIHR ENSFPATEVG SEFSKPCAAV PIRSVAPKSE  60
PHVNVKFKAK PQKVNKHKSS KGLRGIASRL LKVEQPENKP CTSKRTKGEY KYGEATVTKN  120
PNSVYSGAAS ADFSGVPPPF CSCTGVARRC YRWGLGGWQS SCCTITLSEY PLPMNPSKPG  180
NRLGGRKMSN GAYTKLLCRL ATEGRDLSNP VDLKNHWAKH GSNKFITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613159.11e-125PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X2
RefseqXP_016435500.11e-125PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X2
SwissprotO822866e-54BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A1S3X6921e-124A0A1S3X692_TOBAC; protein BASIC PENTACYSTEINE7-like isoform X2
STRINGXP_009613158.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137141415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.42e-56basic pentacysteine 7