PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00521g08008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 692aa    MW: 76453.7 Da    PI: 9.0102
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00521g08008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-08593642147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Peinf101Scf00521g08008.1 593 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 642
                               678999********************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.71E-9399485IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.383588647IPR017930Myb domain
SMARTSM007175.3E-8592645IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10593643IPR009057Homeodomain-like
SuperFamilySSF466898.97E-16594675IPR009057Homeodomain-like
CDDcd116609.41E-17594644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MVLDKRLDYG FNGYQVPPIP RATRSARGRG NIRKKSDGKG MFAFDLLTTV AGKLLLEGES  60
ASNSTDPRSG KDQPAVVKDT AETLKDYEDT SLKENSYNEG CRERGFFISQ IVSEAPVVNH  120
CLSDLTDTFS GPASIITSSD CSEKLGSAEQ FINGDSKHET RNCSTKGELG SSGCGGFSGC  180
TFSTESKKRM KMDLSNDAKI SNIKKDEICS SEFPDLWDRK PSMPVASDNT VKLSLSTDLD  240
AFGSFPMIQN DVKLAIKDDD ERKSYGCTQP STRNKVFRPA PRVGDWRMRK SQASKYWKEN  300
PTSDDEAHIN VDSEARHVYQ NRKNDHSSQR CQSDFPFKKR KLFYCNSFSN SDGGSSNGKC  360
NSPTRDLDRD AAVHSLSSSG ARVAAETSIP RGTRASFRSS DSHVKLKIKS FRVPELFVEI  420
PENATVGSLK ALTAILGGGL RIGVVFQGKK VRDDNKTLWQ AGISHDDKLD ALGFTLEPNP  480
SQASAPLRPE GRSCVLPCDT PQTLTRCTPA PIVIHNRIQQ GTYNAFSDDP GTNLTNFIES  540
DHDSAPSPPD ASLERGAADS RALVPVGAVN AEALAVVPVR NPKRSETAQR RIRRPFSVSE  600
VEALVQAVEK LGTGRWRDVK MRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ  660
ELLDRVLIAH AYWSQQQAKQ QMKHQSETRL LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-555836837107Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773687.10.0telomere repeat-binding protein 5-like isoform X2
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000054760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-145TRF-like 2