PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00520g06005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 33383.3 Da PI: 4.2135 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.6e-19 | 20 | 73 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k Peinf101Scf00520g06005.1 20 KKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 73 56689************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.44E-19 | 14 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.378 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-18 | 18 | 79 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.2E-16 | 20 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.67E-17 | 20 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-20 | 22 | 83 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.0E-6 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-6 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MLEGLDEEGC VEESGHVSEK KRRLSVEQVK ALEKNFEVEN KLEPDRKVKL AQELGLQPRQ 60 VAVWFQNRRA RWKTKQLERD YNINELKSKV YVENGESRGV AVKEETMECE SDDKVIEQSK 120 HRDDINSNLV FGKCDEEEED DNDEDEEAEI NFEQSFKGGG MLNAAAAIAS TINFAHDFKD 180 GSSDSDNSSA ILNEDNSPNA AISSSGAFLI SNNECGSGVG SLSSLNLCFQ FTESTSSKSS 240 LGDAHKANNY YYQPQFVKME EHNFFNGEES CSTLFSDEQA PTLQWYCPED WNWKDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 75 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY101610 | 2e-87 | AY101610.1 Nicotiana tabacum homeodomain protein Hfi22 (Hfi22) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777009.1 | 1e-120 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Refseq | XP_016502437.1 | 1e-120 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A1S4CMF7 | 1e-118 | A0A1S4CMF7_TOBAC; homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A1U7WQP6 | 1e-118 | A0A1U7WQP6_NICSY; homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | Q8L8F9 | 1e-119 | Q8L8F9_TOBAC; Homeodomain protein Hfi22 (Fragment) | ||||
STRING | XP_009777009.1 | 1e-119 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2718 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 3e-43 | homeobox protein 16 |