PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00504g14014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LSD

Protein Properties

Length: 467aa MW: 51027.4 Da PI: 4.1964

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00504g14014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.6	8.4e-13	302	326	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++V+C++C+ V Peinf101Scf00504g14014.1 302 CGSCRQLLSYPQGAKLVKCSCCQIV 326 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.3E-14	299	329	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.7E-10	302	326	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MDENLNKIEK AQIEEEEDEG PPPGFDCVAV VVSENTNDDD NEGPPAGWPL IPQQNDQQLL 60 LVTSEQTTDV EMRSKEHESE DDEDGPPPGW DSVIKQKHLP STPPVTAAVT CDIEMEKKEE 120 VDEDEDNSPP PGWQLIPQPP PVQTSTPPSG TQQALLADVE MEKKEVVVED EDNGAPPGWQ 180 LIPQLQPLQT SPPPSGTQQA PLSDVEMGSK QDCEVEKEGD SLGSESIPMA ENSSPPTPPP 240 QSSSSVASSE MEMGSKQEGT KNEEVKPHNK QSMSHLQQMK PLVPQSSSHA APFSAEMGQM 300 VCGSCRQLLS YPQGAKLVKC SCCQIVNYVL EGTQQAASSL NSTGSTKASF SPSSLACLSR 360 SGFGNPPWFH TNIQLHYEYC AHNSLLRDLV KEKHEMNELS LPMPYTRFSD KRKPSEGDIQ 420 SSEDRRSVIS AADTYNATFN HQIPPQWLAG SIRIDSLKHL GTVNIEI

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MDENLNKIEK AQIEEEEDEG PPPGFDCVAV VVSENTNDDD NEGPPAGWPL IPQQNDQQLL  60
LVTSEQTTDV EMRSKEHESE DDEDGPPPGW DSVIKQKHLP STPPVTAAVT CDIEMEKKEE  120
VDEDEDNSPP PGWQLIPQPP PVQTSTPPSG TQQALLADVE MEKKEVVVED EDNGAPPGWQ  180
LIPQLQPLQT SPPPSGTQQA PLSDVEMGSK QDCEVEKEGD SLGSESIPMA ENSSPPTPPP  240
QSSSSVASSE MEMGSKQEGT KNEEVKPHNK QSMSHLQQMK PLVPQSSSHA APFSAEMGQM  300
VCGSCRQLLS YPQGAKLVKC SCCQIVNYVL EGTQQAASSL NSTGSTKASF SPSSLACLSR  360
SGFGNPPWFH TNIQLHYEYC AHNSLLRDLV KEKHEMNELS LPMPYTRFSD KRKPSEGDIQ  420
SSEDRRSVIS AADTYNATFN HQIPPQWLAG SIRIDSLKHL GTVNIEI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063653.1	1e-146	uncharacterized protein LOC107008945 isoform X2
TrEMBL	A0A2G2XEQ4	1e-146	A0A2G2XEQ4_CAPBA; Protein LOL5
STRING	PGSC0003DMT400076422	1e-137	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	5e-11	lsd one like 2