PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00500g12028.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 310aa MW: 33948.2 Da PI: 8.8094

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00500g12028.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.9e-14	95	139	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Peinf101Scf00500g12028.1 95 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 139 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.997	88	144	IPR017930	Myb domain
SuperFamily	SSF46689	4.93E-17	90	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-17	91	142	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	92	142	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-11	94	139	IPR009057	Homeodomain-like
CDD	cd00167	1.82E-9	95	140	No hit	No description
Pfam	PF00249	1.8E-11	95	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MSSACDDSSS SSSPPATAVT GGEIMLFGVR VKVDPMRKSV SLNNLSQYEQ PNINNSNNNN 60 NESCKVVVDE GYASADDAVV QHQVNSSRER KRGVPWTEEE HKLFLLGLQK VGKGDWRGIS 120 RNFVKTRTPT QVASHAQKYF LRRSNLNRRR RRSSLFDITT DSVSVMPIEE GKYKQETPFS 180 PVLSPTLPAV ETTKTNAYPM TPLGVTVGPM SLSAQIEKPI ESPTLSQQDQ RNSAMLVCPV 240 PMFSVSNPST VFDLNLNQNS TVEPSLIEPS SLSLRLSLSL DHGQASSSTM QSAFKAMSRF 300 SNGESIISVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	4e-67	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016578317.1	1e-127	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	1e-118	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2G3C9P1	1e-126	A0A2G3C9P1_CAPCH; Transcription factor MYB1R1
STRING	XP_009617134.1	1e-120	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	2e-54	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]