PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00464g10019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 566aa MW: 63181.9 Da PI: 6.2351 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.2 | 3.6e-28 | 322 | 376 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++ Peinf101Scf00464g10019.1 322 KMKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 376 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 36.2 | 3.2e-13 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 vl+ d++ + + +r+ lek +y +v ++ + eal + +k +++ ++ + ++dG+ l+ +++++ +lpii+ + + Peinf101Scf00464g10019.1 20 VLLLDEDSNSAAEMRSRLEKMDY-IVYSFCNENEALSAVSDKSesFHVAIVEVCAGNSDGV--LRFLESAK-DLPIIMTSNIHSL 100 79999999***************.***************666667***************5..77777766.9*******9999* PP HHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 84 edalealkaGakdflsKpfdpeelvk 109 +++ +++ +Ga +fl Kp + ++l + Peinf101Scf00464g10019.1 101 STMMKCIALGAVEFLQKPLSDDKLKN 126 **********************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 4.8E-18 | 16 | 153 | No hit | No description |
SuperFamily | SSF52172 | 5.41E-17 | 16 | 138 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 7.2E-4 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 22.828 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.9E-10 | 20 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.50E-11 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 15.266 | 319 | 378 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-28 | 319 | 379 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-18 | 320 | 378 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-25 | 322 | 376 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-8 | 325 | 374 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 566 aa Download sequence Send to blast |
MICTENELLD WKDFPKGLKV LLLDEDSNSA AEMRSRLEKM DYIVYSFCNE NEALSAVSDK 60 SESFHVAIVE VCAGNSDGVL RFLESAKDLP IIMTSNIHSL STMMKCIALG AVEFLQKPLS 120 DDKLKNIWQH VVRKVVSETS LAFNAGGKDV SESIKRVEES LVSLPQLQPV KSATDDKDPN 180 ETEPFTSVPE NHNEQSSGCD KYPAPSTPQL KQGVRSVDDG DCQDHTIFST EQDSGEHDGD 240 TKSVETTYDN SLVENTVQTS PGKQREITVK EENGSCPHQN MEADIPTFSQ SNDPGSSISH 300 SAEPSKASGP HSSSGTKTNK KKMKVDWTPE LHKKFVQAVE QLGIDQAIPS RILELMKVEG 360 LTRHNVASHL QKYRMHRRQI LPKEVERRWP HPQPRNSVQR SYYPHKPIMA FPPYHSNHVP 420 SAGQLYPAWV PPASYPNGVQ VWGSPYYPGW QPADAWHWKP HPGLHADAWG SPVMPPSYGS 480 YPPYPQNAGV YQPNGMQNRY SMLEKSFDLQ PAEEVIDKVV GEAISKPWLP LPLGLKPPST 540 ESVLDELSRQ GISTIPPQIN VSHRRR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 8e-17 | 327 | 376 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC175445 | 0.0 | KC175445.1 Capsicum annuum APRR2-like protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784220.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X2 | ||||
Swissprot | Q6LA43 | 1e-134 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A1U7XCN5 | 0.0 | A0A1U7XCN5_NICSY; two-component response regulator-like APRR2 isoform X2 | ||||
STRING | XP_009784214.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5673 | 15 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-130 | ARR-B family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|