PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00461g09004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36689.6 Da PI: 10.2873 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.6 | 1.4e-18 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ Peinf101Scf00461g09004.1 17 RGHWRPAEDERLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 62 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.8e-18 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T++E+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ + Peinf101Scf00461g09004.1 69 RRPFTEDEEERLLAAHRVHGNK-WALISRLFP-GRTDNAVKNHWHVL 113 679*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.092 | 12 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-29 | 15 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-15 | 16 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 17 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-27 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-13 | 20 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.597 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.28E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MAEGGGSGDD TRSSCPRGHW RPAEDERLRQ LVEQYGPQNW NSIAEKLQGR SGKSCRLRWF 60 NQLDPRINRR PFTEDEEERL LAAHRVHGNK WALISRLFPG RTDNAVKNHW HVLMARKQRE 120 QSKICGKRSY PQDNFLSDSK SPSYGFRRRN NNNNNTNIPK TQEGYNYGTK FSLFEFQNPT 180 KDRVFSVSTY SSSPSWNSPD QLFGRNGSHL LKEISNFSGQ KSLCQNNLSF STHGGGGATI 240 FAVPNNYKKT TTRNPFSYSN NGSDGMTEKV VNISNSTFSF NKILRVSIEQ QQRRQQQQYA 300 EEAIEKKDIP FIDFLGVGIS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-30 | 17 | 117 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-30 | 17 | 117 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597907.1 | 1e-171 | PREDICTED: myb-related protein B-like | ||||
Refseq | XP_016438115.1 | 1e-171 | PREDICTED: myb-related protein B-like | ||||
TrEMBL | A0A1S3XE42 | 1e-170 | A0A1S3XE42_TOBAC; myb-related protein B-like | ||||
STRING | XP_009597907.1 | 1e-170 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-66 | myb domain protein 52 |