PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00452g07001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 266aa    MW: 30198.8 Da    PI: 8.4818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00452g07001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144668123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C + F++   L  H+++H
  Peinf101Scf00452g07001.1 46 YTCSFCRREFRSAQALGGHMNVH 68
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-64373No hitNo description
SMARTSM003550.00614668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2194673IPR007087Zinc finger, C2H2
PfamPF139121.7E-54669IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MCAKRKHDTT LSSNPSNSYG DSWEEQAFAE DAAGALGGCI WPPRSYTCSF CRREFRSAQA  60
LGGHMNVHRR DRARMKQSPP SNISSVDHQV FVPPHHLNNN QVQYSSEICT TFLYNPSSAS  120
HEHGVLRSPN SDPLPTRVSS IVQEQSKINK FSSPPSWSNL VADKYSCLSN VKNEEKKLKS  180
TDLKKEERNL QVIDSSLRAK QDRIEEASTN YKRRRIEENN IPFADLFPKI SLLERCRPQS  240
EALERIPSAI EELDLELRLG ETPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-134168229superman protein
2l1o_A1e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211215KRRRI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-104HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786110.11e-139PREDICTED: zinc finger protein 1
RefseqXP_016497281.11e-139PREDICTED: zinc finger protein 1-like
SwissprotO809427e-27ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A1S4C8481e-138A0A1S4C848_TOBAC; zinc finger protein 1-like
TrEMBLA0A1U7XI081e-138A0A1U7XI08_NICSY; zinc finger protein 1
STRINGXP_009786110.11e-138(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-29zinc-finger protein 10