PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00443g11006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SRS

Protein Properties

Length: 332aa MW: 36092.8 Da PI: 8.5655

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00443g11006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.2	3.5e-67	101	258	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel.ks 80 +++CqdCGnqakk+C h RCRtCC+ rgf+C+thvkstWvpaa+rrerqqq + +s++++++ ++ ++kr+re Peinf101Scf00443g11006.1 101 VNVNCQDCGNQAKKGCPHLRCRTCCRGRGFQCQTHVKSTWVPAARRRERQQQFSHHQSQQQNQHlslgsadHTIHPKRPREYmAG 185 5789*********************************************9999888887777899987777778999988345 PP DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++l+ t+l++++s e+ + +P+evss+avfrcv+vs+++d+ee++aYqtav+igGh+fkG+LydqG+e+ Peinf101Scf00443g11006.1 186 PSNTSLAYTRLPTTSSGLEVGGH-FPSEVSSPAVFRCVKVSAMEDAEEQYAYQTAVNIGGHIFKGMLYDQGPET 258 57788999999999988777665.**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.9E-65	103	257	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-24	104	146	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-27	208	256	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MSWFFNLGGG KDQEQQEQEL ATNSNLLLFK NEEIYNKGFE LWQQSYHLSQ QRSQNQVQDV 60 DFSVGVGPSS SSKPSSSNNS SKSLGFRVMR PGGSSSGAGE VNVNCQDCGN QAKKGCPHLR 120 CRTCCRGRGF QCQTHVKSTW VPAARRRERQ QQFSHHQSQQ QNQHLSLGSA DHTIHPKRPR 180 EYMAGPSNTS LAYTRLPTTS SGLEVGGHFP SEVSSPAVFR CVKVSAMEDA EEQYAYQTAV 240 NIGGHIFKGM LYDQGPETRY SSGGGGGESS SGGGAVAQQR LNLIASATTA TTTTAATSHQ 300 HVALSMFDPS LYPSQLSAFM AGTQFFPPPR PN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628417.1	1e-126	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Refseq	XP_016510843.1	1e-126	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	K4B6C9	2e-77	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S4DBW9	1e-125	A0A1S4DBW9_TOBAC; protein SHI RELATED SEQUENCE 5-like
STRING	XP_009628417.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-67	SHI-related sequence 5

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]