PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00381g24002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 188aa MW: 21278.8 Da PI: 7.5093 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.4 | 7.9e-13 | 15 | 57 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ++i+n+ nr+v+fskRr g+ KKA+ L C++++ + i s+t Peinf101Scf00381g24002.1 15 EKIKNEVNRYVSFSKRRSGLYKKASDLVKQCNVDIGITISSPT 57 579*********************************9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.703 | 7 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-12 | 7 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-18 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-8 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-15 | 16 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-8 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAHKKTAGRQ KVPMEKIKNE VNRYVSFSKR RSGLYKKASD LVKQCNVDIG ITISSPTPGT 60 GNSFSFFHPT VEAVVDRFLN PNTGLSESTR LVATHARNKV NEVIKDLETR EKFASNQVYQ 120 FDQTKETGEI DWWQSIEQFN EDEAIKFKAW LCDVIERMNN RLELLETSTS SSSQAPNSEN 180 ADNTPGTL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016474013.1 | 3e-66 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1S4ABV1 | 6e-65 | A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61 | ||||
STRING | XP_009595152.1 | 5e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-25 | AGAMOUS-like 61 |