PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00381g07018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 287aa MW: 33221.4 Da PI: 6.423

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00381g07018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.5	7.4e-38	18	113	1	98
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL kkv ++++ + +i +vd++kvePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWka Peinf101Scf00381g07018.1 18 LPPGFRFHPTDEELITHYLSKKVVDNNFFA-IAIGDVDMNKVEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATTAGYWKA 101 79***********************877.78***********888999*************************** PP NAM 86 tgkdkevlskkge 98 tgkdke+++ +++ Peinf101Scf00381g07018.1 102 TGKDKEIFR-GKT 113 *****99.443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-42	15	125	IPR003441	NAC domain
PROSITE profile	PS51005	35.35	18	158	IPR003441	NAC domain
Pfam	PF02365	6.8E-18	19	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MENFLGTVNK EDDQQLQLPP GFRFHPTDEE LITHYLSKKV VDNNFFAIAI GDVDMNKVEP 60 WDLPWKAKMG EKEWYFFCVR DKKYPTGLRT NRATTAGYWK ATGKDKEIFR GKTLDDWVIC 120 RVFHKSTGGK KIHISGLERL HSDENEMENS VLQPLTESAS ESRHVHCFSN FTTTQKSQKE 180 MTNYFSNTPF PILSNTMDNF AKNSGPNKFP WHQTPMPSSF PMQDPTILRT LYDTNYDQNM 240 QHIFKKEKVS LSQETGVSTD MNTEISSVVS NLETAVVPQY LDCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-34	15	131	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-34	15	131	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-34	15	131	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-34	15	131	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-34	15	131	17	174	NAC domain-containing protein 19
3swm_B	1e-34	15	131	17	174	NAC domain-containing protein 19
3swm_C	1e-34	15	131	17	174	NAC domain-containing protein 19
3swm_D	1e-34	15	131	17	174	NAC domain-containing protein 19
3swp_A	1e-34	15	131	17	174	NAC domain-containing protein 19
3swp_B	1e-34	15	131	17	174	NAC domain-containing protein 19
3swp_C	1e-34	15	131	17	174	NAC domain-containing protein 19
3swp_D	1e-34	15	131	17	174	NAC domain-containing protein 19
3ulx_A	1e-34	10	114	7	112	Stress-induced transcription factor NAC1
4dul_A	1e-34	15	131	14	171	NAC domain-containing protein 19
4dul_B	1e-34	15	131	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF510215	0.0	AF510215.1 Petunia x hybrida nam-like protein 18 (NH18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625550.1	1e-136	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_016463159.1	1e-136	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-81	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	Q8LKN6	0.0	Q8LKN6_PETHY; Nam-like protein 18
STRING	XP_009625550.1	1e-136	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	4e-84	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]