PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00379g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARR-B
Protein Properties Length: 469aa    MW: 51167.4 Da    PI: 4.9708
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00379g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.44.4e-25317368153
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                               k +++WtpeLH++Fv+aveqL G+++A+P++ilelm+++gLt+++v+SHLQ Y
  Peinf101Scf00379g00001.1 317 KMKIDWTPELHKKFVKAVEQL-GIDQAIPSRILELMNIEGLTRHNVASHLQLY 368
                               5689*****************.*****************************99 PP
2Response_reg36.62.4e-13221272109
                               EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
              Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                               l+ d++++ +  +r+ lek +y +v ++ d  eal  +  k   +++ ++ ++  ++dG   lk +++++ +lp i+v++  + +
  Peinf101Scf00379g00001.1  22 LLLDKDNNSAFEMRSRLEKMDY-IVYTFCDENEALSAVSSKSevFHVAIVEVNADNSDG--GLKFLESAK-DLPTIMVSDIHSIS 102
                               77899*****************.***************777778************776..344454555.89************ PP

                               HHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                               ++ +++ +Ga +fl Kp + ++l +
  Peinf101Scf00379g00001.1 103 TMMKCIALGAVEFLQKPLSDDKLSN 127
                               ********************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004480.003119129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.35520133IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.02E-1321135IPR011006CheY-like superfamily
CDDcd001569.94E-922132No hitNo description
Gene3DG3DSA:3.40.50.23001.4E-1422150No hitNo description
PfamPF000721.5E-822127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS512949.792314374IPR017930Myb domain
SuperFamilySSF466897.88E-16315369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-23315368IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-22317368IPR006447Myb domain, plants
PfamPF002496.0E-7322368IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVCTENELLG CKDFPKGLRV LLLLDKDNNS AFEMRSRLEK MDYIVYTFCD ENEALSAVSS  60
KSEVFHVAIV EVNADNSDGG LKFLESAKDL PTIMVSDIHS ISTMMKCIAL GAVEFLQKPL  120
SDDKLSNIWQ HVVHKAFNSG GKNVPESLKP VKESLLPMLE LKQVKSEADN ENLNGAETFT  180
SVVDNQESQP CCDKYPAPST PQLNQGVRSV DDGDLQDHTI LSTEQDSGVH EGDTKSVDTA  240
CWNSVAETTV LANFPGHISE GISKEEHDSS ADQKMEDRNA TCSQSSDCPG NGSTHSADSS  300
KASGLHSSSG TRANKKKMKI DWTPELHKKF VKAVEQLGID QAIPSRILEL MNIEGLTRHN  360
VASHLQLYAD VWGCPVMPPP LGSSPSYPQN ASGFHRADGI QNKQTILEKS VQYQPAEEVI  420
DKVVKEAINN PWLPLPLGLK PPSTESVLDA LSQQGISTVP SHINGSHRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16319368352Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436050.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016436051.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016436052.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016436053.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA431e-106APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S3X7R10.0A0A1S3X7R1_TOBAC; two-component response regulator-like APRR2
STRINGXP_009595585.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-106ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]