PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00364g10003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 474aa    MW: 53104.7 Da    PI: 6.4168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00364g10003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001887104219
                               EETTTTEEESSHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                               +C++Cgk Fs++ ++  H
  Peinf101Scf00364g10003.1  87 VCENCGKEFSSWKSFLEH 104
                               6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.11739IPR015880Zinc finger, C2H2-like
PfamPF139120.00491739IPR007087Zinc finger, C2H2
PROSITE profilePS501578.61739IPR007087Zinc finger, C2H2
SuperFamilySSF576671.85E-51739No hitNo description
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576671.85E-581105No hitNo description
SMARTSM0035518086106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.56E-6232255No hitNo description
PROSITE profilePS5015710.076233260IPR007087Zinc finger, C2H2
SMARTSM003550.13233255IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-9233257IPR007087Zinc finger, C2H2
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-6295322No hitNo description
SMARTSM003550.52300322IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328300322IPR007087Zinc finger, C2H2
PfamPF139126.2E-13300323IPR007087Zinc finger, C2H2
PROSITE patternPS000280302322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDCIDQEQQQ QQPVFKHYCR VCKKGFVCGR ALGGHMRAHG IGDEVVAMDD DDQASDWEDK  60
FGGSVKEGNK RMYQLRTNPN RQKSNRVCEN CGKEFSSWKS FLEHGKCSSE DAEESLVSSP  120
GSEGEDYIYD GRKEKGYGWS KRKRSLRTKV GGLSTSTYQS SEEEDLLLAK CLIDLANARV  180
DTSLVEPEES CASASREEER AARNSMAYGF TPLVSTRVPF DNKAKGASSK GLFECKACKK  240
VFNSHQALGG HRASHKKVKG CYAAKQDQLD DSLIDDQDVN ITHDQEFLQS SKSMRKSKIH  300
ECSICHRVFS TGQALGGHKR CHWITSNSPD SSKFHFNGHV EQINLRSNMH KSDALDLNNL  360
PTHEDMSRIR RDPFNPLSFE VSTEIHLQYP WSCAPKNDDN DNYYLEEIKI DSNANNGKYN  420
INNGATQNVE DDEADSKLKL AKLSDLKDMN TNSDNPAHWL QVGIGSTTEV GADS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004550.0AB000455.1 Petunia x hybrida mRNA for PEThy;ZPT4-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785654.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_016484023.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLP937170.0P93717_PETHY; PEThy;ZPT4-1
STRINGXP_009785654.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.18e-30C2H2-like zinc finger protein