PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00359g02013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26495.1 Da    PI: 10.1174
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00359g02013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.5e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  Peinf101Scf00359g02013.1  9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59
                              79***********************************************96 PP
2K-box91.51.5e-3077166392
                     K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                               +++ +++++   e+++ e+ kL ++ie +qr++Rh++G+dL++Lsl+eLq+Leqq++++lk+iRs+Kn+l++e+i+el kk ke+
  Peinf101Scf00359g02013.1  77 ERKLNANDSDPKENWTVEYPKLMSRIELIQRNIRHYMGQDLDPLSLRELQSLEQQIDTALKRIRSRKNQLMHESISELHKKLKEN 161
                               5566667778899***********************************************************************9 PP

                     K-box  88 qeenk 92 
                               +++++
  Peinf101Scf00359g02013.1 162 EKTQN 166
                               99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.057161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-33291IPR002100Transcription factor, MADS-box
CDDcd002656.37E-42276No hitNo description
PRINTSPR004041.8E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2484165IPR002487Transcription factor, K-box
PROSITE profilePS5129714.39988179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGRIQLKR IENKISRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTE  60
SSMESILERY ERYSYAERKL NANDSDPKEN WTVEYPKLMS RIELIQRNIR HYMGQDLDPL  120
SLRELQSLEQ QIDTALKRIR SRKNQLMHES ISELHKKLKE NEKTQNGQTQ PISSQNDATF  180
MVPQPPSLSH HVANLTIGGA FGAKTVTNTN GVQASNSQMP PWMIRHVNNE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-21174173MEF2 CHIMERA
6byy_B4e-21174173MEF2 CHIMERA
6byy_C4e-21174173MEF2 CHIMERA
6byy_D4e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352450.0AF335245.1 Petunia x hybrida MADS-box transcription factor FBP29 (FBP29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608614.11e-133PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X4
RefseqXP_016466964.11e-133PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN61e-100FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLQ9ATE21e-167Q9ATE2_PETHY; MADS-box transcription factor FBP29
STRINGXP_009608611.11e-131(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-76AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]