PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00359g01030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 145aa MW: 16590.2 Da PI: 4.0029 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.7 | 9.9e-12 | 18 | 48 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+eEd+ll ++v+++G g+W++++r+ Peinf101Scf00359g01030.1 18 KGPWTPEEDKLLSEYVNLHGEGRWSSVSRCA 48 79**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-13 | 10 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.306 | 13 | 46 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.81E-9 | 16 | 50 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0016 | 17 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-10 | 18 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.02E-8 | 20 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MVGMMGWGAN SDQQEWRKGP WTPEEDKLLS EYVNLHGEGR WSSVSRCAEE VIMQNGDEIN 60 EHDDTLTFTY HPNMENTIVD LPPVRTSSDI SYIWTDNFVM DGLWGGLWNL DVDDHSQPAS 120 DKCKVAIQNQ PTDYQVNLYN GGFIF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-42 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016504544.1 | 1e-32 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | A0A1S4CU73 | 3e-31 | A0A1S4CU73_TOBAC; myb-related protein 305-like | ||||
STRING | XP_009802593.1 | 6e-31 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-15 | myb domain protein 305 |