PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00336g23040.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 84aa MW: 9639.07 Da PI: 9.6882

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00336g23040.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed +l++++ +lG g+W++ a+ g++R++k+c++rw++yl Peinf101Scf00336g23040.1 30 KGPWTLDEDSILIHYISLLGQGRWDSLAQFAGLKRSGKSCRLRWLNYL 77 79*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.622	25	81	IPR017930	Myb domain
SuperFamily	SSF46689	7.48E-17	25	83	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.3E-20	29	80	IPR009057	Homeodomain-like
SMART	SM00717	8.4E-14	29	79	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-16	30	77	IPR001005	SANT/Myb domain
CDD	cd00167	2.02E-11	32	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MEEVKATQVT YSSGMPVTVN LAEDNIEMRK GPWTLDEDSI LIHYISLLGQ GRWDSLAQFA 60 GLKRSGKSCR LRWLNYLRPN LRRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016504485.1	6e-34	PREDICTED: transcription factor MYB108-like
Swissprot	P81391	1e-25	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A1S4CTP6	1e-32	A0A1S4CTP6_TOBAC; transcription factor MYB108-like
STRING	XP_009631883.1	3e-33	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	1e-27	myb domain protein 24

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]