PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00336g18008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 28921.7 Da PI: 4.4876 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.8e-09 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rgrWT+eEde+l ++++ G g+W++ ++ Peinf101Scf00336g18008.1 14 RGRWTAEEDEILTKYIHANGEGSWRSLPKN 43 8************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 5 | 45 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.31E-7 | 8 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.717 | 9 | 64 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-6 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.56E-4 | 16 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAE EDEILTKYIH ANGEGSWRSL PKNAAKKGTQ DLNKQRRGRV 60 SRSAMQKNRN NLSSTKGTST ASTLSKPQQP PKENNTISMP STPNIIEKEV LSSTTTSSGQ 120 DANNTHITSD NYASELDNEM LWHEELDPDF IFTCLWNEEG ENLENNNSHN SNTEILSVNV 180 DMVSPGNSKI NETSTLMEDG TTLDWDWQYL SIWAEQEENM SNNNISSRQL SNEALVEIDP 240 VQQVDYNHSE LLAWLLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-44 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-44 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621617.1 | 2e-32 | PREDICTED: transcription factor MYB12-like | ||||
TrEMBL | A0A1J6J2L6 | 3e-27 | A0A1J6J2L6_NICAT; Transcription factor myb12 | ||||
STRING | XP_009621617.1 | 9e-32 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 2e-23 | myb domain protein 111 |