PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00306g06009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 299aa    MW: 34302.9 Da    PI: 10.3252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00306g06009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.82e-401242368128
                       NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                                Ptdeel+++yL+++++ +++++ ++i+evd+yk++Pw+Lp      +k+ yfFs rd+ky++g r+n+a+ sgyWk tg+ k++
  Peinf101Scf00306g06009.1 124 YPTDEELIMYYLCNQATLRPCPV-SIIPEVDVYKFDPWELP------KKKRYFFSLRDRKYPNGIRPNKAVVSGYWKDTGTCKAI 201
                               5**********************.89**************9......3678********************************** PP

                       NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +s +++ vg+kk Lvfykgr pkg ktdW++heyrl
  Peinf101Scf00306g06009.1 202 HS-GSKYVGIKKALVFYKGRPPKGIKTDWIIHEYRL 236
                               *9.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.047117263IPR003441NAC domain
SuperFamilySSF1019414.71E-48124262IPR003441NAC domain
PfamPF023656.7E-17124236IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MWSLRLTTVA LPHFAIVPTA AKQQQQPLQR PNSKTQNGKQ KITTTTNPNL QSNIKKTKQG  60
FDSKNKEPTW QCVKNCGACC KLDKGPIAST TFPFPISVRS IITGCYRCRS AIVVAAPKSF  120
LLTYPTDEEL IMYYLCNQAT LRPCPVSIIP EVDVYKFDPW ELPKKKRYFF SLRDRKYPNG  180
IRPNKAVVSG YWKDTGTCKA IHSGSKYVGI KKALVFYKGR PPKGIKTDWI IHEYRLSESK  240
SQPTRPNDSM KLDDWVIYRI SYHSITFFWK SSNHLIKLLI KMYSKTESNI ANDMSSHFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-5011426015162NO APICAL MERISTEM PROTEIN
1ut4_B5e-5011426015162NO APICAL MERISTEM PROTEIN
1ut7_A5e-5011426015162NO APICAL MERISTEM PROTEIN
1ut7_B5e-5011426015162NO APICAL MERISTEM PROTEIN
4dul_A5e-5011426015162NAC domain-containing protein 19
4dul_B5e-5011426015162NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1627502e-37EU162750.1 Petunia integrifolia subsp. inflata haplotype S1 S-locus F-box-like protein c (SLFLc) gene, promoter region.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2513722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-71NAC-like, activated by AP3/PI