PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00296g07022.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 1161aa    MW: 128582 Da    PI: 6.508
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00296g07022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.8e-20187288199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++ yr++++r++lt+GW+  v+ ++L +gD+
  Peinf101Scf00296g07022.1 187 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNVWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDS 270
                               99*****************************9777766.49******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F +d++++f  +++++++
  Peinf101Scf00296g07022.1 271 VLFIRDEKHQF--LLGIRKT 288
                               ****6554555..9998876 PP
2Auxin_resp118.46e-39313396183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+++s+F+v+YnPra++seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Peinf101Scf00296g07022.1 313 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 396
                               79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-38178302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-40178316IPR015300DNA-binding pseudobarrel domain
CDDcd100179.71E-18186287No hitNo description
PfamPF023621.4E-17187287IPR003340B3 DNA binding domain
SMARTSM010191.9E-21187289IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237187289IPR003340B3 DNA binding domain
PfamPF065073.0E-34313396IPR010525Auxin response factor
PROSITE profilePS5174526.86610481132IPR000270PB1 domain
SuperFamilySSF542772.55E-610651126No hitNo description
PfamPF023092.9E-610951133IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1161 aa     Download sequence    Send to blast
MNCYELNGDG FLLAGEKKSI NPELWQACAG PLVNLPVAGT HVVYFPQGHS EQVSHLPFLP  60
FLQVVCIAVY TSLWLFANMS QYGVFSPYFV IWLSQLSTLL TVCCSLLHWY FQVAASIKKD  120
VEAQVPNYPN LPSKLICLLH NVTLHADPET DEVYAQLTLQ PVPSFDKEAL LRSDLSMKAN  180
KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDYSL QPPAQELVAR DLHDNVWTFR  240
HVYRGQPKRH LLTTGWSLVV SGKRLFAGDS VLFIRDEKHQ FLLGIRKTNR QPTNLSSSVL  300
SSDSMHIGIL AAAAHAAANN SPFTVFYNPR AGPSEFVIPL AKYYKATYSS QVSLGMRFRM  360
MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERINR VSIWEIEPIT  420
APFLICSSPF FNSKRSRQPG MPDGDYSDMD GIFKRTMPWL GDDFGATDTQ GLPGLSLVQW  480
MNMQHNPSLA NPMLPNYLNS LSGSALQNLS GADLSRQLGL AAPQLHQQHN LQFNTHRPNQ  540
QGQQLDQLQK LPSATLNTLD SIMQSQQQLS EISQQPRQNL TNQSLPTTQV QAQLLQAQSL  600
LQSQNALPHQ QSIQNQLQRN LPQNLPQQHP QQHILSQTQQ QSFMPSQPSD PVNQQIHFSD  660
NQAQLQLLQR LQQQQKSLLA QQSALQQSSQ LGAIQDQQKQ FLDVSQNFSR SLATSQMLDA  720
SQTTSTSTSL SQSQVAQQQM TRINSHSNLR FSQPTQQPKV QQQQSGILPD LSGPVGYSLP  780
RTTYQHSTNV SNLTGTAGGG QSVLIDDVPS WSTSVSTNSC QNVVQPSMNG RIHGSAGARE  840
ETTHCSGPLL HSSGLEVMSA NSNLVKELQH KPNVKPSVNV SKNQNHEFLA PQTLNTSGVQ  900
LDYLDSSSSA TSACLSQNDV HLQQTTDPLS SGSQPLIFRE SPDGEVQGDS RNNMAFGANM  960
ENQLGLPTMP DPLITKSLVG SRKDFSNNLS SGGGMLSSYE SPKEAQPELP ASMVPQYMTF  1020
NSIDSTINDG NFMDGGAWDQ PPQLPRLRTY TKVYKRGAVG RSIDIGRYAG YEELKLDLAR  1080
RFGIEGQLED RQRIGWKLVY VDHENDVLLV GDDPWEEFVS CVRCIKILSP QEVQQMSLDG  1140
DFGGASVLPN QACSSSDAGD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-14510741772388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651300.0HM565130.1 Solanum lycopersicum auxin response factor 19-1 (ARF19-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360656.10.0PREDICTED: auxin response factor 19-like
RefseqXP_006360657.10.0PREDICTED: auxin response factor 19-like
TrEMBLM1B2I20.0M1B2I2_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000355920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19