PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00255g01007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 774aa    MW: 87399.1 Da    PI: 5.2264
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00255g01007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.7e-24472559186
                  trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                               +Wt+++v++Li+a+++m+e+  + +  +k++W+++s++m erg ++sp+qC++k+++lnk++k++++  +++ +++++++ ++++
  Peinf101Scf00255g01007.1 472 KWTDEMVKLLITAVSYMGEDALSnRIFIKGKWRAISSVMGERGHHVSPQQCEDKFNDLNKKFKRLNDVLGRGtACQVVENPALLE 556
                               7****************9887651569*********************************************559****999999 PP

                  trihelix  84 qle 86 
                                ++
  Peinf101Scf00255g01007.1 557 TMD 559
                               996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.420.409.7E-775188No hitNo description
PfamPF000223.2E-1345359IPR004000Actin family
SuperFamilySSF530673.56E-656155No hitNo description
SMARTSM002689.0E-2177380IPR004000Actin family
CDDcd000122.87E-1910183No hitNo description
PRINTSPR001904.6E-542837IPR004000Actin family
PRINTSPR001904.6E-545162IPR004000Actin family
PROSITE patternPS0040605565IPR004001Actin, conserved site
PRINTSPR001904.6E-546385IPR004000Actin family
PROSITE patternPS011320106118IPR020902Actin/actin-like conserved site
PRINTSPR001904.6E-54117130IPR004000Actin family
PRINTSPR001904.6E-54142161IPR004000Actin family
SuperFamilySSF530672.19E-86149360No hitNo description
Gene3DG3DSA:3.90.640.101.3E-39189255No hitNo description
PRINTSPR001904.6E-54238254IPR004000Actin family
Gene3DG3DSA:3.30.420.407.0E-34256340No hitNo description
PROSITE profilePS500906.295470530IPR017877Myb-like domain
PfamPF138379.6E-20470584No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MADAEEIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA  60
QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP EDHPVLLTEA PLNPKANREK  120
MTQIMFETFD VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VTHTVPIYEG YALPHAILRL  180
DLAGRDLTDC LMKILTERGY TFTTSAEREI VRDVKEKLAY VALDYEQELE TAKSSSAVEK  240
SYELPDGQVI TIGAERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV  300
LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQNFVK  360
IECFEFIKMN MYYAVNRVLV RGRLDLFRSM QVNRKITDHP NQGSTVLVQH APEVTSFDIS  420
DMEDINQEML LFDAIELIGA ENREALLEDL NDVREVSGHA EEKQPAGYHR MKWTDEMVKL  480
LITAVSYMGE DALSNRIFIK GKWRAISSVM GERGHHVSPQ QCEDKFNDLN KKFKRLNDVL  540
GRGTACQVVE NPALLETMDL SDDLKEEMNK LLGSKQLFYQ EMCSYNNRNR LFLPHDQEVQ  600
QSVLLAVKGN DKSEPKNVLL DLPLKRKNGG EERGSNIACA SLNCTTTLDL NLVQDMPAKR  660
KVGEEERVLN MAPSSLNCTT ALDSNALHPN RNYNSEEREI PDEHILPCLL QLEEQKLQIQ  720
AQILELEKRR FKCTKFCSKK DEELQKMMLD NEVIKLENQR LVLELKRREM PPYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1nlv_A0.033651363Actin
1nm1_A0.033651363Actin
1nmd_A0.033651363Actin
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1586120.0AB158612.1 Nicotiana tabacum mRNA for actin, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125851620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-56