PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00254g03010.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 533aa MW: 57860.8 Da PI: 8.9343

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00254g03010.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Peinf101Scf00254g03010.1 23 FVCEVCNKGFQREQNLQLHRRGH 45 89*******************88 PP
2	zf-C2H2	15.2	6.1e-05	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ Peinf101Scf00254g03010.1 99 YKCEKCSKKYAVQSDWKAHTKTC 121 9********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.15E-8	22	45	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.2E-6	22	45	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0041	23	45	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.4E-5	23	45	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.094	23	45	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	64	94	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-5	87	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.15E-8	94	119	No hit	No description
SMART	SM00355	71	99	119	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MAADPDAEII ALSPKTLMAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKEVK 60 RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV QSDWKAHTKT 120 CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARNPPT LSSIGSQLYG SSNSMSLGLS 180 KMGSQMADQH HSSSTDILHF GSTNIKTSGQ FDHNLMGTSI GSAFRPSTSF FLPPDHQSNQ 240 DYANKPSIHG LMQLPDLHNN PNNNSPSVAA ANMFNLNFFQ NSSSNNSASH IDNENNGNSN 300 MSGAGGLLFP SHHHHQFSNH PSGSSGEGSN NSSNVFSAGS LLADPHHISS SIPSLYGSSI 360 NNNNSPAPPM SATALLQKAA QMGSTTSNNS TASLLKAFGA TGSSSSGTKS DIHPSAGMNF 420 GSVVYGNNGQ DQQDQNDYGV AGGYNKVNFE QQPPQKKQMI NNFSMEMGTE QANRLTRDFL 480 GVGEIVRSMS GGFGNSSSQR EQQQQQMSSL DSERKTAPPP QSHQPFGATG NFQ

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MAADPDAEII ALSPKTLMAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKEVK  60
RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV QSDWKAHTKT  120
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARNPPT LSSIGSQLYG SSNSMSLGLS  180
KMGSQMADQH HSSSTDILHF GSTNIKTSGQ FDHNLMGTSI GSAFRPSTSF FLPPDHQSNQ  240
DYANKPSIHG LMQLPDLHNN PNNNSPSVAA ANMFNLNFFQ NSSSNNSASH IDNENNGNSN  300
MSGAGGLLFP SHHHHQFSNH PSGSSGEGSN NSSNVFSAGS LLADPHHISS SIPSLYGSSI  360
NNNNSPAPPM SATALLQKAA QMGSTTSNNS TASLLKAFGA TGSSSSGTKS DIHPSAGMNF  420
GSVVYGNNGQ DQQDQNDYGV AGGYNKVNFE QQPPQKKQMI NNFSMEMGTE QANRLTRDFL  480
GVGEIVRSMS GGFGNSSSQR EQQQQQMSSL DSERKTAPPP QSHQPFGATG NFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-33	95	156	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-33	95	156	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786293.1	0.0	PREDICTED: zinc finger protein JACKDAW-like
Refseq	XP_016482767.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
Swissprot	Q9ZUL3	1e-124	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A1S4B1G4	0.0	A0A1S4B1G4_TOBAC; protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBL	A0A1U7X614	0.0	A0A1U7X614_NICSY; zinc finger protein JACKDAW-like
STRING	XP_009786293.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	9e-97	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]