PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00231g20002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 548aa    MW: 62339.6 Da    PI: 8.7122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00231g20002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019481503123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kCp+C++ F++   L  H r+H
  Peinf101Scf00231g20002.1 481 HKCPYCDRIFKSGQALGGHKRSH 503
                               79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-5931No hitNo description
PROSITE profilePS501579.141936IPR007087Zinc finger, C2H2
SMARTSM003550.19931IPR015880Zinc finger, C2H2-like
PfamPF139126.7E-7931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-589116No hitNo description
SMARTSM003550.2394116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.72394121IPR007087Zinc finger, C2H2
PfamPF139129.6E-796118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6393417No hitNo description
SMARTSM003557.6395417IPR015880Zinc finger, C2H2-like
PfamPF139129.5E-8395419IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808395417IPR007087Zinc finger, C2H2
PROSITE patternPS000280397417IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6476503No hitNo description
SMARTSM003550.015481503IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-9481503IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159481511IPR007087Zinc finger, C2H2
PROSITE patternPS000280483503IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MEEDQVMKFV CKLCNKRYPC GKSLGGHMRS HVLANSAEFE EKVEEANLKK VPFWTSTSNG  60
KNCKLGENSG YGLRENPKKT WRAEDSNSPL PQEKVCQQCG KVFQSMKALC GHMACHSEKD  120
RGLKDDSNSW TSESKKLVMI DSNSDTEAEE LISYRYRSKT KRYKKIVVKS SICKVNNSNN  180
YNCSSSVSEI DHELEQEEVA KCLMMLSRDS WIWNGVNSVV ESSDNNSVVL ETKSSSTDMR  240
NARKNSLKCV YNRDEKPRTK KREGRNLKVD MLEAETQSEN SDSDYFLGEN QKVESDGSVE  300
GFQGNGNYKS STSKMSLNAW LNEHRTDDKK GLNRIKRYLT ESRKDLSKKY EQDDYGTASN  360
LDKYESRRGT TDQYNQPGIG NESKKINLSV KKRKYECLNC KKTFGSYQAL GGHRPCHKKF  420
NDYSESAYET GENSLAAEND PKCIRIGKHK ESFSNKKQAV SAQDLSYVPE KKVKPKKSKG  480
HKCPYCDRIF KSGQALGGHK RSHFIHHGGE ENLNQSSAVK RDVADLLDLN LPAPVDDEDD  540
EYARFMSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631793.10.0PREDICTED: uncharacterized protein LOC104121485 isoform X1
RefseqXP_009631797.10.0PREDICTED: uncharacterized protein LOC104121485 isoform X1
RefseqXP_016476437.10.0PREDICTED: uncharacterized protein LOC107798024 isoform X1
TrEMBLA0A1S4AIC00.0A0A1S4AIC0_TOBAC; uncharacterized protein LOC107798024 isoform X1
STRINGXP_009631793.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-56C2H2-like zinc finger protein