PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00190g04006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 399aa    MW: 44682.2 Da    PI: 8.1856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00190g04006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07228250123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C+ Cgk F+r  nL+ H+r H
  Peinf101Scf00190g04006.1 228 HYCQVCGKGFKRDANLRMHMRAH 250
                               68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.15E-6226253No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6228254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034228250IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653228255IPR007087Zinc finger, C2H2
PfamPF128740.0024229248No hitNo description
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SMARTSM0035575283316IPR015880Zinc finger, C2H2-like
SMARTSM0035522321343IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MIQGTANTPC FLNTNPQNIP LCASAIHHNL QEDANISSSL GYSHQPSSFM YNLSLLKEKV  60
HHVQSVAAMF ISSDDQAIQP SNESTAMAIA SMGTLIQEII TTASSLMFSC QKMTLGSTST  120
TNHNSSRFLE PSQIKIQDDS QVDPLTQGFY SNNETFDWYE ENYASCNNNY EDNKNHTSTT  180
IAISDHHSNE LGKRELMSST PKEKVIMNGE NYDIVELDAA DLLAKYTHYC QVCGKGFKRD  240
ANLRMHMRAH GDEYKSSAAL RNPSKNNGNV GTNDGLSKIS NKYSCPQEGC RWNRKHAKFQ  300
PLKSMICVKN HYKRSHCPKM YVCKRCNKKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK  360
DKLMGHVSLF VGHSPIINSL AKIEKHDLQN NGQSSSITG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799889.10.0PREDICTED: zinc finger protein STOP1 homolog
RefseqXP_016478397.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-109STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1S4ANS90.0A0A1S4ANS9_TOBAC; zinc finger protein STOP1 homolog
TrEMBLA0A1U7YKX10.0A0A1U7YKX1_NICSY; zinc finger protein STOP1 homolog
STRINGXP_009799889.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-111C2H2 family protein