PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00181g02023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 289aa MW: 32081.9 Da PI: 8.1747 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104 | 9.5e-33 | 75 | 129 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +++rY+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+e+ Peinf101Scf00181g02023.1 75 SRARYRECLKNHAASIGGNVTDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRKEQ 129 5789*************************9.999********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.7E-30 | 77 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.2E-31 | 78 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-22 | 78 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.961 | 79 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.38E-16 | 218 | 278 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 219 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-27 | 220 | 277 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MALTSNEDKE MRMQGSLGYH SLDQNIDQGN NNHSVPNHIL QPVVLQDQEK SSGHDGAITP 60 VMTYSGGGSK FKVTSRARYR ECLKNHAASI GGNVTDGCGE FMPSGEEGTL EALKCAACNC 120 HRNFHRKEQP NVGGDNNAIM VVHPLQLPPS LPSPIPSMNH HHQHGRPVWT TMPAQPVKMA 180 FGGSGGSGAT DSSSEELNFN TYQQATSEHP QAQPPFVLAK KRFRTKFSQD QKEKMLEFAE 240 KLGWRIPRED DTEVQRFCSQ VGVKRQVFKV WMHNNKNPSA KKNPLQEEP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-24 | 221 | 277 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU457811 | 4e-73 | CU457811.8 S.lycopersicum DNA sequence from clone LE_HBa-132M8 on chromosome 4, complete sequence. | |||
GenBank | CU468239 | 4e-73 | CU468239.4 S.lycopersicum DNA sequence from clone SL_MboI-124K5 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 4e-73 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763792.1 | 1e-145 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Refseq | XP_016490581.1 | 1e-145 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9ZPW7 | 8e-62 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A1S4BNW1 | 1e-143 | A0A1S4BNW1_TOBAC; zinc-finger homeodomain protein 5-like | ||||
TrEMBL | A0A1U7V6K4 | 1e-143 | A0A1U7V6K4_NICSY; zinc-finger homeodomain protein 5-like | ||||
STRING | XP_009763792.1 | 1e-144 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75240.1 | 7e-60 | homeobox protein 33 |