PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00160g10002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 552aa    MW: 62655.1 Da    PI: 9.3584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00160g10002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017490512123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + Cp C+++F++   L  H r+H
  Peinf101Scf00160g10002.1 490 HACPFCPRMFKSGQALGGHKRSH 512
                               67******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.78931IPR015880Zinc finger, C2H2-like
PfamPF139120.00121131IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.40899126IPR007087Zinc finger, C2H2
SMARTSM003550.07599121IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.01E-6100121No hitNo description
PfamPF139121.8E-7101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-6400424No hitNo description
SMARTSM00355240405425IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-7405424IPR007087Zinc finger, C2H2
SMARTSM003550.093490512IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85490512IPR007087Zinc finger, C2H2
PfamPF139121.2E-6490512IPR007087Zinc finger, C2H2
PROSITE patternPS000280492512IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEEGQDLKYF CKLCNKRYPC GKSFGGHMRS HVLANSAKLE EKVEFKQKKG PSWTNGGKIH  60
KRDHKSKFEH GEHSGYGLRD NPKKTWRISD SRSPLPRDNV CQQCGKVFQS LKALCGHMAC  120
HSGKDRGMKD DNSWTSETKN LVMDSNSDTE AEEPRLRSKS NSKRYNRLIA KSSSFCFVNN  180
KSVSSSVSEI DDQEQEAVAK CLMMLSMDTW ICNGVNSIVE SSDNNSVVLE TKSSSVDMKI  240
ERKDSPKCVN NLDETPRSKK KADRNLKLDL LNAEAQSENS DSEYFLGEYK KVESDASVDE  300
FHRNGNYQWN TSNTSLGGWF DESRPDEKKE LTRMKNYITD SRKDLSKDYK YDSYGMVSHL  360
DKRESRKRIK DSSYRPNLLN ETIKNVKPSF KSPEGSKHTQ KKKKYECLNC KKTFSSYQAL  420
GGHRPCNKNT NAYFESTYET GENSRDADNG PNYINKGKHR ETLSNKPAAH SPDHSSNPEK  480
KMKPKKFKGH ACPFCPRMFK SGQALGGHKR SHFIVSSENH YQASAVQGKI VDLLDLNLPA  540
PVEDVNGEPA FV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004560.0AB000456.1 Petunia x hybrida mRNA for PEThy; ZPT4-2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072858.10.0uncharacterized protein LOC107017095
TrEMBLP937180.0P93718_PETHY; PEThy; ZPT4-2
STRINGPGSC0003DMT4000073160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-45C2H2-like zinc finger protein