PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00146g02036.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 387aa    MW: 44924.2 Da    PI: 8.6596
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00146g02036.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-161693998
                              HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                        B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                                +k+g l +p  f+++ +++k+   +  +  + g++W vkl  ++++    l++GW++F+++n+L+ gDf+vFk++g++ef   v 
  Peinf101Scf00146g02036.1 16 PGFKNG-LKIPIGFLKHLKEQKH---EHAVLRRGGNKWLVKL--NGRR----LEEGWENFAEENDLQLGDFLVFKHEGDMEF--EVF 90
                              566666.********66665544...5677889*********..8888....*************************99999..666 PP

                              EE- CS
                        B3 96 vfr 98
                              +f+
  Peinf101Scf00146g02036.1 91 IFD 93
                              655 PP
2B351.91.3e-16149234595
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++++ l+++ l++p +fa+e+ +++++  +++l+d + rsW+ ++    +  +++++ GW+eF+  n LkegD ++F+ ++ ++
  Peinf101Scf00146g02036.1 149 TIRPYCLSRHFLSVPAQFARENRLNNRK-CEIILRD-ERRSWTCNM--YPCETQTYIGCGWREFCIMNCLKEGDRLIFEIVS-NG 228
                               5679999***************998655.59*****.679******..9******************************887.55 PP

                               E..EEE CS
                        B3  90 felvvk 95 
                               +++ ++
  Peinf101Scf00146g02036.1 229 EKPIFR 234
                               556666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-21397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-24397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.901795IPR003340B3 DNA binding domain
CDDcd100173.38E-17893No hitNo description
SMARTSM010196.6E-181095IPR003340B3 DNA binding domain
PfamPF023624.1E-131892IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-19140235IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-19142235IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-15144236No hitNo description
SMARTSM010191.0E-13145239IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73145238IPR003340B3 DNA binding domain
PfamPF023625.6E-15149235IPR003340B3 DNA binding domain
PROSITE profilePS508636.019327357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MKFSPEKPHF FKPILPGFKN GLKIPIGFLK HLKEQKHEHA VLRRGGNKWL VKLNGRRLEE  60
GWENFAEEND LQLGDFLVFK HEGDMEFEVF IFDSSQCERV YEWPQQVVHE REEAKEKPKS  120
NIKTSGKAFP KVEGAYKDMH LTHPHFICTI RPYCLSRHFL SVPAQFAREN RLNNRKCEII  180
LRDERRSWTC NMYPCETQTY IGCGWREFCI MNCLKEGDRL IFEIVSNGEK PIFRFYGNYD  240
IVVSIGKIDL RGSPSLQLEL KKNNLDDNKR IRDKGLHFQE ERTDRRIKAL NVNAPISKVP  300
ASTSTDDANP HFISTIKPYT IKNPVLFIKA NGVQVGDTYK FELINNGTPP IAYFHSKYSG  360
KDDNDHKINC QDNEAVGDGQ GKEDRSK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092839e-41AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence.
GenBankHG9755209e-41HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254820.11e-125PREDICTED: B3 domain-containing protein REM17-like isoform X1
TrEMBLA0A1J6HZ941e-125A0A1J6HZ94_NICAT; B3 domain-containing protein rem10
STRINGSolyc08g006210.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.19e-39B3 family protein