PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00145g19003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 495aa    MW: 55597.3 Da    PI: 7.8906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00145g19003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000184669123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                              + C+ Cgk Fs+   L  H+++ H
  Peinf101Scf00145g19003.1 46 HICGECGKQFSSGKALGGHMSSaH 69
                              68******************9988 PP
2zf-C2H2140.00015108127221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C +C k F++k +L  H+r
  Peinf101Scf00145g19003.1 108 VCDICRKNFPSKKSLFGHMR 127
                               7******************8 PP
3zf-C2H216.32.9e-05359381123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC++C+ksF+++  L  H ++H
  Peinf101Scf00145g19003.1 359 YKCNICDKSFTSHQALGGHRSSH 381
                               9***************9999998 PP
4zf-C2H211.20.0011443463121
                               EEETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                               +kC+ C+ksF++   L  H+r
  Peinf101Scf00145g19003.1 443 HKCKVCDKSFPTGQALGGHQR 463
                               79**********999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-64468No hitNo description
SMARTSM003550.214669IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8064674IPR007087Zinc finger, C2H2
PfamPF139123.2E-84669IPR007087Zinc finger, C2H2
PROSITE patternPS0002804869IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-6102129No hitNo description
PROSITE profilePS501579.432107134IPR007087Zinc finger, C2H2
SMARTSM003550.0082107129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
PfamPF139121.4E-6109131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-9358381No hitNo description
SMARTSM003550.0043359381IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074359386IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-4359382IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.0E-8359382IPR007087Zinc finger, C2H2
PROSITE patternPS000280361381IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-9438465No hitNo description
SMARTSM003550.022443465IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-12443467IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221443470IPR007087Zinc finger, C2H2
PROSITE patternPS000280445465IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEAHQKNKKS SEKGVLKVKL KMPKIVKEVV DEEGDIREEI PKQKEHICGE CGKQFSSGKA  60
LGGHMSSAHV QANNRDYMFK KQLKVSKGGF LEEGEVSELE KPYFGKIVCD ICRKNFPSKK  120
SLFGHMRCHP DRNWRGMQRP NNKNVKNNHN HDDDVDADAD DDTYFVNPQL VKELPEPNLD  180
NNILIEAARN TDVAPPVVDL KGCLKSWGVT DKRGRSAIIR NNRSRSNSIS SSEQKDLQDA  240
VHQLIRLVNG DNISPENPHK SEVLEAMCSN SVTPDAESNV KELPLSSLID KPKRKAVVVE  300
PTSDEENTRE ICYSGIESTD SKFKNSVVNK KRRVDQKGKD VSPIKKRFDF VNAVTPEKYK  360
CNICDKSFTS HQALGGHRSS HNKFKITIEN TFDHHQEVKS STTKVVPSIG GEEVTHVHQL  420
GEEINSNVEQ VGSNMRGGSE NIHKCKVCDK SFPTGQALGG HQRCHWSNQD ESSQNVSKVL  480
DFDLNELPHV DDGYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591959.14e-98PREDICTED: uncharacterized protein LOC104088902
RefseqXP_016514970.14e-98PREDICTED: uncharacterized protein LOC107831697
STRINGXP_009591959.12e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-19C2H2 family protein