PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00135g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 350aa MW: 39781.1 Da PI: 8.6607 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.3e-06 | 186 | 205 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Peinf101Scf00135g00014.1 186 FACNICNKTFNRYNNMQMHM 205 78*****************9 PP | |||||||
2 | zf-C2H2 | 16.6 | 2.2e-05 | 270 | 292 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F k + ++H +++ Peinf101Scf00135g00014.1 270 FSCRKCGKTFAVKGDWRTHEKNC 292 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.76E-6 | 171 | 209 | No hit | No description |
SMART | SM00355 | 0.095 | 186 | 208 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 186 | 205 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.7E-4 | 186 | 205 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.783 | 186 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 188 | 208 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 233 | 265 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.31E-5 | 256 | 290 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 257 | 290 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 32 | 270 | 290 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.808 | 270 | 290 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGIRNNFHVQ DMDLCSFQSP NFIEWLKPSS NSSSISPSPS SSSSSTITQP RFLHYETTNP 60 MSTFLKLPRL YHPQEVQADI NIDQTVQCLP LLSKLTDTKT ETKERDFGEK KGCFEVKEEK 120 IEKVQVSLHI GLPNMGNGCV VEAKPFNYKE EVSMEKSSKI NGCSFNSESR FWIPTPAQIL 180 VGPMQFACNI CNKTFNRYNN MQMHMWGHGS EYRKGPESLR GTQPAAMLRL PCYCCAQGCK 240 NNINHPRAKP LKDFRTLQTH YKRKHGTKAF SCRKCGKTFA VKGDWRTHEK NCGKLWYCTC 300 GSDFKHKRSL KDHIRSFGNG HSPHPSLDGF EDDNKECITG GSTDDENLIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-122 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232596.1 | 0.0 | PREDICTED: zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 1e-125 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A1J6KZ54 | 0.0 | A0A1J6KZ54_NICAT; Zinc finger protein wip3 | ||||
STRING | XP_009609728.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-120 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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