PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00125g06032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 25395.9 Da PI: 4.9732 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.6e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+ +W + ++++g++R++k+c++rw++yl Peinf101Scf00125g06032.1 14 KGPWSPEEDAKLKAYIEQHGTCgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-22 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.275 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.01E-20 | 15 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.23E-11 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 4.774 | 63 | 93 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-7 | 66 | 92 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGRAPCCDKN SVKKGPWSPE EDAKLKAYIE QHGTCGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIL SLYISIGSSW PELPILQPIP YSNEEPRFND HASIRMLLMK 120 LGGKFSDDDN DDEKAMNEPP SGLEMLYDDM LNNKHATTLG GSLDLEDMNN LVFPLPPLDV 180 SNNEGHQHGT LLQGGALNEL RDLCTLLRNP NELVCSNICI FKVLDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-14 | 14 | 98 | 7 | 89 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463820.1 | 1e-56 | myb-related protein Hv1 | ||||
TrEMBL | B9SX81 | 2e-57 | B9SX81_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002530600.1 | 3e-58 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 1e-47 | myb domain protein 84 |