PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00094g07015.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 298aa MW: 33256.4 Da PI: 6.9331

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00094g07015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.9e-18	128	182	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ L+k+l+L rqV vWFqNrRa+ k Peinf101Scf00094g07015.1 128 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTK 182 788899***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	19	No hit	No description
Pfam	PF04618	1.7E-18	4	104	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	3.1E-17	124	187	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.925	124	184	IPR001356	Homeobox domain
SMART	SM00389	6.6E-15	126	188	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-18	127	193	IPR009057	Homeodomain-like
Pfam	PF00046	9.9E-16	128	182	IPR001356	Homeobox domain
CDD	cd00086	1.20E-14	128	185	No hit	No description
PROSITE pattern	PS00027	0	159	182	IPR017970	Homeobox, conserved site
SMART	SM00340	1.2E-25	184	227	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.3E-11	184	218	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGNEKEDGLG LSLSLGMSCP QNNLKNELTL STTPSLSLNL LPFMHHHQIS AERNEEARDN 60 VRGEIDMNQA ARIIECDEEL EDHQVIMVSS PNSTVSSVSG KRSHEREENE GERATSSLED 120 DGGDAAARKK LRLSKEQAAV LEETFKEHNT LNPKQKLALS KQLNLRPRQV EVWFQNRRAR 180 TKLKQTEVDC EYLRRCCENL TEENRRLQKE VNELRALKLS PQMYMNMSPP TTLTMCPQCE 240 RVAVSSSSSS AASSSAVTGA SVSRSNHPIG ALHQPPTPLK PWAALLSSKT LDVQRSQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	184	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619639.1	1e-175	PREDICTED: homeobox-leucine zipper protein HAT3-like
Refseq	XP_016462220.1	1e-175	PREDICTED: homeobox-leucine zipper protein HAT3-like
Swissprot	P46602	6e-85	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A1S3ZCP5	1e-174	A0A1S3ZCP5_TOBAC; homeobox-leucine zipper protein HAT3-like
STRING	XP_009619639.1	1e-174	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1118	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-79	homeobox-leucine zipper protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]