PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00078g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 139aa MW: 16324 Da PI: 6.253 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 84 | 2.5e-26 | 1 | 135 | 239 | 374 |
GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 +vv+ ea++n++ F++r eal ++alfd+le+ +++++ r++ E + ++ i n+++ceg+er+ r+ +l Wr+ +e++G Peinf101Scf00078g00002.1 1 MVVIGIEANTNAPIFMDR-YEALFLFTALFDCLETCKGQDNRYRMTFEGLIWRKIIYNMITCEGEERTFRNARLVVWRALFENFG 84 789999************.59**************************************************************** PP GRAS 324 Fkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvSaWr 374 k+ +lse qa+l+ + + +g +++ + + l++ Wk+ p+++vS+W+ Peinf101Scf00078g00002.1 85 IKEQELSEASLYQANLMAVRSA-HGfCTLDMDGKGLMIKWKETPIMFVSSWK 135 ***************9999888.55268899999999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.7E-24 | 1 | 135 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 11.948 | 1 | 115 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MVVIGIEANT NAPIFMDRYE ALFLFTALFD CLETCKGQDN RYRMTFEGLI WRKIIYNMIT 60 CEGEERTFRN ARLVVWRALF ENFGIKEQEL SEASLYQANL MAVRSAHGFC TLDMDGKGLM 120 IKWKETPIMF VSSWKFHHD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253877.1 | 1e-68 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1J6I210 | 3e-67 | A0A1J6I210_NICAT; Della protein rgl1 | ||||
STRING | PGSC0003DMT400056229 | 2e-62 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18359 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-17 | RGA-like 1 |