PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00071g13015.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 429aa MW: 47789.9 Da PI: 6.7416

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00071g13015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	43	63	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r H Peinf101Scf00071g13015.1 43 CHVCSKGFSSGKALGGHMRIH 63 *******************99 PP
2	zf-C2H2	11.9	0.00069	102	120	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C+ Cgk F++ +L H+r Peinf101Scf00071g13015.1 102 CSLCGKKFPSMKSLFGHMR 120 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	6.4E-8	41	63	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	41	63	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.286	41	63	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.26E-7	42	63	No hit	No description
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.26E-7	95	122	No hit	No description
SMART	SM00355	0.015	100	122	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.349	100	122	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.9E-8	101	124	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
IPKSEVKEDR DDDHDQDIFG FEDEDEDEGQ FRNTKNNNIS RICHVCSKGF SSGKALGGHM 60 RIHFQAAANK EFIISGKKRK RLNQEVDMKE KGSNNIDQQP ICSLCGKKFP SMKSLFGHMR 120 CHPDRHWRGI QPPTTYHNTT SWSSDQNDSA TTTVDLSKVV GGGGWSVTAK RSRKSIDCGA 180 INSEVHLSRN SSSEEKQLCD AVHYLMLLAY GDSFKSGLTG SGHYKKDAGE GNTVYPARKS 240 VRMDYSDDEA GSNIKSEAEK QVNSKLYETT DNDTSMFVKM KSIKRRRKKM KLKHLGSLQD 300 AASNNTFPQQ NAVQVTPDDI NYRSSDSTII VPMEGSTEET VACNSNLLLD STNEYKIFSS 360 TQTLGGHKIC EYWNSRIDDQ PQLSSSQVSS LGEVRNTSGP RILDFDLNEL ALPEDEAGCN 420 HGCVSYSSF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

IPKSEVKEDR DDDHDQDIFG FEDEDEDEGQ FRNTKNNNIS RICHVCSKGF SSGKALGGHM  60
RIHFQAAANK EFIISGKKRK RLNQEVDMKE KGSNNIDQQP ICSLCGKKFP SMKSLFGHMR  120
CHPDRHWRGI QPPTTYHNTT SWSSDQNDSA TTTVDLSKVV GGGGWSVTAK RSRKSIDCGA  180
INSEVHLSRN SSSEEKQLCD AVHYLMLLAY GDSFKSGLTG SGHYKKDAGE GNTVYPARKS  240
VRMDYSDDEA GSNIKSEAEK QVNSKLYETT DNDTSMFVKM KSIKRRRKKM KLKHLGSLQD  300
AASNNTFPQQ NAVQVTPDDI NYRSSDSTII VPMEGSTEET VACNSNLLLD STNEYKIFSS  360
TQTLGGHKIC EYWNSRIDDQ PQLSSSQVSS LGEVRNTSGP RILDFDLNEL ALPEDEAGCN  420
HGCVSYSSF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2050	22	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	1e-18	C2H2 family protein