PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00062g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 346aa MW: 38740.7 Da PI: 8.4385 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.1 | 2e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i+n++ r+ +f kRr g+lKKA+E+ +LCd++++ i++s+ Peinf101Scf00062g00002.1 10 FINNDTERKASFKKRRRGLLKKAHEIKTLCDVDICAILYSP 50 89*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.502 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-24 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.10E-28 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 9.2E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-16 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MTRKKVKLAF INNDTERKAS FKKRRRGLLK KAHEIKTLCD VDICAILYSP YHCDPEVFPS 60 HDDVLETIKK FRELPEMEQT KKMMNQEGFL RQRIKKVDDQ IRKIRKENRI REFTNTMYEM 120 MGGQQLAGNM HPYDLNDLGF VISQRIKEAE AMLEELRKEG SVAVPQPSSG PVGPGGSNYP 180 KEPLAPGGTS YFQEPRAPLM VPPISVVPPV ADPSMVPPMA RPSFARPPPV PQPMHPPTLS 240 PLPMSPQTFP PMVSQMISPM PQPPKAPRVV PQTPPPVTFP MTPLLDSPMN PPVVESDYHQ 300 NNRYAFPDSP SLPEGMSFDD ALMNFVNGTT SSSIDQDPSS SNNKDV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFINNDTERKASFKKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018625294.1 | 1e-78 | PREDICTED: proline-rich protein 36-like | ||||
TrEMBL | A0A314LD67 | 4e-65 | A0A314LD67_NICAT; Agamous-like mads-box protein agl80 | ||||
STRING | XP_009597191.1 | 1e-72 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1329 | 10 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-41 | AGAMOUS-like 80 |