PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00055g17013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 741aa    MW: 80217.9 Da    PI: 6.3866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00055g17013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.79.8e-33319376260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Peinf101Scf00055g17013.1 319 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 376
                               8****************************************.***************85 PP
2WRKY104.17.5e-33531589159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Peinf101Scf00055g17013.1 531 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 589
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28316377IPR003657WRKY domain
SuperFamilySSF1182901.31E-25317377IPR003657WRKY domain
SMARTSM007749.0E-37318376IPR003657WRKY domain
PROSITE profilePS5081123.399319377IPR003657WRKY domain
PfamPF031063.0E-25319375IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-37516591IPR003657WRKY domain
SuperFamilySSF1182901.57E-28523591IPR003657WRKY domain
PROSITE profilePS5081138.733526591IPR003657WRKY domain
SMARTSM007746.6E-38531590IPR003657WRKY domain
PfamPF031065.1E-25532589IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MGGFDDHVAI MGDWMPPSPS PRTFFSSLLG DDVGPRSNFE FTNENIHGNI ASGPQEHVGN  60
SDGKDGAQAG ETSEQTVKFS AMSDQKMSSR GGLLERMAAR AGFNAPKLNT ESLRPADLSQ  120
NQGVRSPYLT IPPGLSPTTL LESPVFLSNS MVQPSPTTGK FLFGSGMESR NSALMMEDPD  180
KRNENASESN NSSSFSFKPV PETAPSLFPG VTSRVNPSNH SQQGFPNTEV SGHSQNSLLS  240
HSVEATQIPT QNGALYQASD FPRFSAEKDV KGSNVTPQSR TFQTVGSTVE HSPPLDEPQD  300
EDIDQRGGGD PHVVGAPAED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCP VKKKVERSHE  360
GHITEIIYKG AHNHPKPPPN RRSALGSTNS LGEQQLDGAE QGGGVDSDLG QANVHKAPGA  420
GGLDWRNNNL DVTSAHLSSE YYNGSAPFPA QNNTQLESGN AVDVSSTFSN DEDEDDRGTQ  480
GSVSQGYDGE GDESESKRRK LESYSTEMTG ATRAIREPRV VVQTTSEVDI LDDGYRWRKY  540
GQKVVKGNPN PRSYYKCTSA GCNVRKHVER ASHDLKSVIT TYEGKHNHDV PAARNSSHVN  600
SGVSNTLSTP VTGPAQSHLH RPEPSQLQNA MTRYDRPPSL GSFGLAGRHQ LGPTSGFSYG  660
MNQQGLASLA MAGLHPNQSK SSEVPAHSYL GQPRPMHDVG FMFPKEEPKM EPMSDPGLNN  720
LSNGSSVYQQ FMSRLPLGPQ M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37319592878Probable WRKY transcription factor 4
2lex_A8e-37319592878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111240.0AB711124.1 Solanum tuberosum StWRKY11 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305535.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0P0UVP00.0A0A0P0UVP0_SOLTU; Transcription factor
STRINGPGSC0003DMT4000569520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-178WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]