PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00055g15004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 448aa    MW: 49731.7 Da    PI: 7.3893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00055g15004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000455070323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C+ C+k Fs+   L  H+r H
  Peinf101Scf00055g15004.1 50 CEVCNKGFSSGKALGGHMRIH 70
                              *******************99 PP
2zf-C2H219.23.4e-06122142323
                               ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                               C+ Cgk F++  +L  H+r+H
  Peinf101Scf00055g15004.1 122 CSVCGKNFPSMKSLFGHMRSH 142
                               ********************9 PP
3zf-C2H213.10.00029300322123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C ksF ++  L  H ++H
  Peinf101Scf00055g15004.1 300 YKCNTCEKSFATHQALGGHRSSH 322
                               9***************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-54772No hitNo description
PROSITE profilePS501579.7644875IPR007087Zinc finger, C2H2
PfamPF139127.2E-84870IPR007087Zinc finger, C2H2
SMARTSM003550.124870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-45070IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.681120142IPR007087Zinc finger, C2H2
SMARTSM003550.016120142IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-8121144IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-9121142No hitNo description
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-4122142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.19E-9295322No hitNo description
PROSITE profilePS5015710.845300327IPR007087Zinc finger, C2H2
PfamPF139121.6E-7300323IPR007087Zinc finger, C2H2
SMARTSM003550.066300322IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280302322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVDYQDLQVG MSGTLWIQLK IEDKQVQELD HNQDIMDYEV PKNNDHTRIC EVCNKGFSSG  60
KALGGHMRIH VQAAKKLLSV GKKCKKLNPF GSRYYKKRIL LQQDDDQENY NNDIKNQLAP  120
ICSVCGKNFP SMKSLFGHMR SHPERAWRGI QPPAPNKNSC LSSVSNEIAA TTKSGDLSVP  180
GWSVKAKRGR KGTIAEATNS SFGSRSFSFD QEKDDEEHEL HDAVGHLMLL ANGDKTSADQ  240
ELEITNSNSL TSKAENEQVY ENKKNKKKIK LRRLGSVQDF VSPVSVDHDQ KLVMGTPEKY  300
KCNTCEKSFA THQALGGHRS SHNKFRMVIQ NSVEDDIVTN VATSSIIGPV EASEEAAAST  360
SKLLVDTGKI NGNTNISTSQ VFGVQNRCQW GSPIDYQAGP STSRLTSPGE VSHSIGRQIL  420
DFDLNELPPQ EDEIAGGRDH QYFTFFPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004540.0AB000454.1 Petunia hybrida taz1 mRNA for tapetum-specific zinc finger protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620226.11e-141PREDICTED: zinc finger protein Xfin-like
TrEMBLP937160.0P93716_PETHY; Tapetum-specific zinc finger protein 1
STRINGXP_009620226.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-28C2H2 family protein