PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00052g06028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 111aa MW: 12601.8 Da PI: 10.6715 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.1 | 8.8e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqv f+kRr+g+lKKA+E+S+LCd++vav++fs+ g+ly++ss Peinf101Scf00052g06028.1 9 KRIEEKSSRQVAFCKRRKGLLKKAKEISILCDIDVAVVVFSNLGRLYDFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.595 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-26 | 1 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MGRKKVEIKR IEEKSSRQVA FCKRRKGLLK KAKEISILCD IDVAVVVFSN LGRLYDFSSN 60 HSLQGGALIV QAFMKIQGTE QFKGVRGGMS KSQQINNLGY NNRKELIFYL C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY370523 | 2e-60 | AY370523.1 Petunia x hybrida MADS-box protein 17 (PMADS17) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795052.1 | 7e-31 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X1 | ||||
Refseq | XP_009795053.1 | 6e-31 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X2 | ||||
Refseq | XP_016435771.1 | 7e-31 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X1 | ||||
Refseq | XP_016435773.1 | 6e-31 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X2 | ||||
Swissprot | Q2QW53 | 6e-23 | MAD13_ORYSJ; MADS-box transcription factor 13 | ||||
Swissprot | Q8RU31 | 5e-23 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
TrEMBL | Q6UGR1 | 3e-31 | Q6UGR1_PETHY; MADS-box protein 6 (Fragment) | ||||
TrEMBL | Q6UGR2 | 3e-31 | Q6UGR2_PETHY; MADS-box protein 17 (Fragment) | ||||
STRING | XP_009795052.1 | 3e-30 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA24929 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 6e-19 | AGAMOUS-like 44 |