PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00049g04001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 342aa    MW: 38948.1 Da    PI: 6.4615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00049g04001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004581103323
                               ET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                               C+   Cgk+F +   L++H   H
  Peinf101Scf00049g04001.1  81 CSyeGCGKTFIDAGALRKHSHIH 103
                               77779**************7766 PP
2zf-C2H222.33.4e-07108132123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               y+C+   Cgk Fs   nL++H++tH
  Peinf101Scf00049g04001.1 108 YVCHyeGCGKAFSLDFNLRSHMKTH 132
                               9***********************9 PP
3zf-C2H216.52.4e-05138163123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               + Cp   Cgk++ + + Lk+Hi + H
  Peinf101Scf00049g04001.1 138 HICPypECGKRYAHEYKLKNHIAStH 163
                               679999****************9988 PP
4zf-C2H215.16.6e-05201226123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               y+Cp   C+k + + + L+ H+r+ H
  Peinf101Scf00049g04001.1 201 YSCPyeGCDKAYIHEYKLNLHLRNmH 226
                               99*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.0E-1474104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003279103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78379108IPR007087Zinc finger, C2H2
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576677.98E-982132No hitNo description
Gene3DG3DSA:3.30.160.609.7E-14105132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.2E-4108132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.778108137IPR007087Zinc finger, C2H2
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576673.49E-9118165No hitNo description
Gene3DG3DSA:3.30.160.602.4E-7133164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743138168IPR007087Zinc finger, C2H2
SMARTSM003550.02138163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-8196223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.97E-5197231No hitNo description
PROSITE profilePS5015711.344201231IPR007087Zinc finger, C2H2
SMARTSM003550.0015201226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
METHYMNAHH LFERRPFSKS KAPAVKWFKE WVPQDVVATG GKCYVLKWVN EATLKALKEK  60
PKEPEVPAPE PEPTSEVLFL CSYEGCGKTF IDAGALRKHS HIHGERQYVC HYEGCGKAFS  120
LDFNLRSHMK THSQENYHIC PYPECGKRYA HEYKLKNHIA STHQKNNTPE AVKYTPPVEK  180
PMKTPKSSSA AYAPASSDRP YSCPYEGCDK AYIHEYKLNL HLRNMHPGHF PDENTKNAQS  240
TGDNEMDEGS DQDAYAAKRG NGKIQKQSRP KPSLKQPPLK VARKSSSASP ANLSIGKKPW  300
PVKEENYNEE DSEETEEERD DAGDGWRYGE NDEDDEETEE DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-19812228119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176940.0AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350548.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-130YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLM1AIE20.0M1AIE2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000234590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]