PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00045g00027.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 874aa    MW: 97401.2 Da    PI: 8.6536
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00045g00027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-07765814147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Peinf101Scf00045g00027.1 765 RRPFSVSEVEALVEAVEQLGTGRWRDVKMRAFdsaDHRTYVDLKDKWKTL 814
                               678999********************9766668**9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.907.9E-4554633No hitNo description
SuperFamilySSF542361.59E-6561645IPR029071Ubiquitin-related domain
PROSITE profilePS500538.764565635IPR000626Ubiquitin domain
CDDcd017690.00768569635No hitNo description
PROSITE profilePS5129416.441760819IPR017930Myb domain
SMARTSM007175.4E-8764817IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-9765815IPR009057Homeodomain-like
SuperFamilySSF466891.88E-15766847IPR009057Homeodomain-like
CDDcd116606.91E-16766816No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MVSKKRLNCG FTGYQIPAIP KAPRSARKRR PCKKLDDDQI CAFELLAAVA GKLLLESESS  60
ASSNAGALEG KDDPADCRDS SKYGVEDDKA VKSECLDQGS CVESAYIPEV ADPEQNFKNG  120
SSKPYHAENK SSLEHSSTII RSDSLTXLKT FRNKWSSWKT ILIKIKGVIS NKKRLNCGFT  180
GYQIPAIPKA PRSARKRRPC KKLDDDQICA FELLAAVAGK LLLESESSAS SNAGALEGKD  240
DPADCRDSSK HGVEDDKAVK SECLDQGSCV ESAYIPEVAD PEQNFKNGSS KPYHAENKSS  300
LEHSSTIIRS DSLTKDWSDV KLENCKEVNK YGNLRNKVED EYLNLDDPCQ IRTVEGTRKQ  360
LDDNSKQDEL TVVNNCSVKD PIQKIVNNST LNNSDSSVQL PLYRDQVPCA SFVNSRNNVK  420
LGIRDDDENY FGCYRYSTKI RTLRSTSRNS YRRMRRMLTS RHWKVAPKLK DFERSYSNDG  480
LRPFCRNRKN MHANERRRLE IPSKRRKLCD HSFAVTYDQE ASCESISNSP ENGIKKDMIS  540
SPGIQHKGAG ASASARNHQK KDPNVKFSIK SFKVPELYIE VPETETIGSL KKTVMEAVTA  600
ILGSGIRVGM VLQGKKVRED NKTLQQAGIS KNGNLDTLGF TLEPSFTNIP PSLPPKDDKI  660
KKDDTPASAS YITDQELSRH PPSPILDSGP PNALSRPPET KLDKHDESNR ELEMSPNNPT  720
DQSADEAVPD CKALAIVPPV NEEAVAVVSV NHKSRRSELS QRRTRRPFSV SEVEALVEAV  780
EQLGTGRWRD VKMRAFDSAD HRTYVDLKDK WKTLVHTASI APQQRRGEPV PQELLDRVLA  840
AHSYWSQHQA KQHGKQEADQ PLKIVDAQVQ NVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-657508742121Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785792.10.0PREDICTED: telomere repeat-binding protein 3-like isoform X1
TrEMBLA0A1U7X0V70.0A0A1U7X0V7_NICSY; telomere repeat-binding protein 3-like isoform X1
STRINGXP_009785792.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.19e-81TRF-like 2