PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00044g01008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 162aa    MW: 18655.7 Da    PI: 4.5853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00044g01008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-081542128
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                              rg W+++Ed++l+d++ ++G g+W++++
  Peinf101Scf00044g01008.1 15 RGLWSPDEDQKLKDYILRHGHGCWSSVP 42
                              788**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-10943IPR009057Homeodomain-like
PROSITE profilePS500906.4811070IPR017877Myb-like domain
SuperFamilySSF466894.41E-71044IPR009057Homeodomain-like
PfamPF002491.0E-61542IPR001005SANT/Myb domain
CDDcd001678.75E-51841No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGCKQMDKPK QKHKRGLWSP DEDQKLKDYI LRHGHGCWSS VPINADTDQS SSLQVDFARE  60
NCKSNLPRVL FSEWLSFDQL NGQDFKNSSN QKSKNNFGYN NSVFQDSCMH GPLMNDINQA  120
LNREIVDDMF QPTLEFEDYI SADGFEELIS GEFNINGDVM YI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629823.11e-40PREDICTED: transcription factor LAF1-like
TrEMBLA0A1S4D5K52e-38A0A1S4D5K5_TOBAC; uncharacterized protein LOC107826222
STRINGXP_009629823.14e-40(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-14myb domain protein 19